Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g0088 ATGAATCTAGGTGCGGCGGAGGAAGAATCGCCGCAGGAGATTCATATTCCGGCCGAAATCGATTGGCAAATGCTCGATAAATCTAAATTCTTCTTTCTCGGTGCAGCGTTGTTTTCAGGTGTTTCGGCTTCTCTTTACCCTATGGTGGTGTTGAAAACTCGGCAACAGGTTGCTCATTCGCAACTTCCTTGCATCAGAACTGCATTTTCACTTGTCCGCCATGAAGGTTTTCGAGCTCTCTACCGAGGATTTGGTACTTCTCTAATGGGGACTATCCCGGCTAGAGCTCTATACATGGGAGCTCTTGAGATTACAAAGAGCTATGTCGGAACTGCCACCATTAAAGTGGGATTTCCAGAGACTACTGCAGCTACCATGGCTAACGCAGCTGCTGGATTGAGTGCTGCAATGGCAGCTCAGCTTGTGTGGACTCCTGTTGATGTTGTGAGTCAAAGGCTCATGGTTCAACCTAGCTACAACAATCCCAATTCTTCCTCAACTCATTACATCAATGGAATCGATGCATTTAGAAAGATCCTCAATGCCGACGGCCTCCGAGGCCTCTACCGAGGATTCGGGATATCGATTTTGACCTACGCACCATCGAATGCTGTGTGGTGGGCTTCTTATTATGTAGCCCAGCGGCTAGTTTGGGGTGGAATTGGCTGCTGTTATCATGCAAAGAAGGTTGATGAAGGCAATGAAAATGGAGGTTGTAGTAATGTCTACAAACCGGATTCCAAGACTGTGATTGCGGTTCAGGGGGCGAGCGCAGCAATGGCCGGGAGTATATCGGCTTTGATAACAATGCCACTTGATACAATCAAGACAAGATTGCAAGTTTTGGATGGGGATGAAAATGGGAGAAGAGGGCCAACTATAGGACAGACATTGAGGAATTTGGTAAGGGAAGGAGGGTGGACGGCATGTTACCGAGGCTTGGCACCGCGATGCGCATCAATGTCGATGTCTGCAACGACGATGATCACTACATATGAGTTTTTGAAACGGCTATCAACAAAGAATCAAGAGAGTTTAACAAGCTAA 1047 47.18 MNLGAAEEESPQEIHIPAEIDWQMLDKSKFFFLGAALFSGVSASLYPMVVLKTRQQVAHSQLPCIRTAFSLVRHEGFRALYRGFGTSLMGTIPARALYMGALEITKSYVGTATIKVGFPETTAATMANAAAGLSAAMAAQLVWTPVDVVSQRLMVQPSYNNPNSSSTHYINGIDAFRKILNADGLRGLYRGFGISILTYAPSNAVWWASYYVAQRLVWGGIGCCYHAKKVDEGNENGGCSNVYKPDSKTVIAVQGASAAMAGSISALITMPLDTIKTRLQVLDGDENGRRGPTIGQTLRNLVREGGWTACYRGLAPRCASMSMSATTMITTYEFLKRLSTKNQESLTS 348
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 846194 847240 + ClG42_09g0008800.10 Clacu09g0088 256396
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g0088 348 SUPERFAMILY Mitochondrial carrier 23 335 IPR023395 -
Clacu09g0088 348 ProSiteProfiles Solute carrier (Solcar) repeat profile. 26 108 IPR018108 -
Clacu09g0088 348 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 8 344 - -
Clacu09g0088 348 ProSiteProfiles Solute carrier (Solcar) repeat profile. 123 216 IPR018108 -
Clacu09g0088 348 Pfam Mitochondrial carrier protein 253 341 IPR018108 -
Clacu09g0088 348 Pfam Mitochondrial carrier protein 36 110 IPR018108 -
Clacu09g0088 348 Pfam Mitochondrial carrier protein 125 217 IPR018108 -
Clacu09g0088 348 Gene3D Mitochondrial carrier domain 30 347 IPR023395 -
Clacu09g0088 348 PRINTS Mitochondrial carrier protein signature 81 99 IPR002067 GO:0055085(InterPro)
Clacu09g0088 348 PRINTS Mitochondrial carrier protein signature 132 154 IPR002067 GO:0055085(InterPro)
Clacu09g0088 348 ProSiteProfiles Solute carrier (Solcar) repeat profile. 249 338 IPR018108 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu09g0088 Clacu-Chr9:846194 Clacu10g0165 Clacu-Chr10:1974042 7.10E-10 dispersed
Clacu05g0786 Clacu-Chr5:6756815 Clacu09g0088 Clacu-Chr9:846194 6.20E-64 transposed
Clacu05g1976 Clacu-Chr5:28864369 Clacu09g0088 Clacu-Chr9:846194 1.80E-133 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g0088 K15121 - csv:101210602 630.943