Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g0089 ATGGATGGAGGTGGCTTAGTGCACAATCGCTCAGTGGAAGATGTTTTCAGTGATTTTAGGGGACGAAGAAACGGCATCATCAAAGCCCTCACCGCAGATGTTGAAGAGTTCTATCAACAATGTGATCCTGAGAAGGAAAATCTATGCTTGTATGGCTTTCCAAATGAAGTATGGGAAGTTAATTTACCTGCTGAAGAAGTACCTCCAGAGCTTCCAGAGCCAGCGTTGGGTATTAATTTTGCAAGAGATGGCATGCAAGAAAGGGATTGGTTGGCATTGGTTGCTGTCCATAGTGATTCTTGGTTGCTCTCTGTTGCCTACTATTTTGGTGCGAGATTTGGATTTGATAAAACTGATAGGAGGCGGCTTTTTAATATGATAAATGATTTGCCAACTGTATTTGAAGTAGTCACAGGTATTGCAAAGAAACAAGTTAAGGAAAAGTCATCAAGTGCTAATGGTAGCAAATCCAAGTCAAGCTTAAAAACGAGGGAAGCTGAAATGCAAGGAATGTATGCTAGGCAGCCGCAGGCAAGGGAAGAGGTAGAGACGTTGTATGAAGAAGATGAAGACGAGCACGGTGACACCTTATGTGGGGCATGTGGTGAGAATTATGCTTCAGATGAATTTTGGATTTGCTGTGATATCTGTGAGAAATGGTTCCATGGGAAGTGTGTTAGAATAACTCCTGCTAAAGCCGAGCACATTAAGCAGTACAAATGCCCATCTTGCAGCAACAAGAGAAGCCGCATTTAA 756 42.59 MDGGGLVHNRSVEDVFSDFRGRRNGIIKALTADVEEFYQQCDPEKENLCLYGFPNEVWEVNLPAEEVPPELPEPALGINFARDGMQERDWLALVAVHSDSWLLSVAYYFGARFGFDKTDRRRLFNMINDLPTVFEVVTGIAKKQVKEKSSSANGSKSKSSLKTREAEMQGMYARQPQAREEVETLYEEDEDEHGDTLCGACGENYASDEFWICCDICEKWFHGKCVRITPAKAEHIKQYKCPSCSNKRSRI 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 848848 851250 - ClG42_09g0008900.10 Clacu09g0089 256397

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g0089 251 SMART PHD_3 197 245 IPR001965 -
Clacu09g0089 251 ProSiteProfiles Zinc finger PHD-type profile. 195 247 IPR019787 -
Clacu09g0089 251 SUPERFAMILY FYVE/PHD zinc finger 187 249 IPR011011 -
Clacu09g0089 251 MobiDBLite consensus disorder prediction 147 174 - -
Clacu09g0089 251 FunFam PHD finger alfin-like protein 190 246 - -
Clacu09g0089 251 Pfam PHD-finger 198 244 IPR019787 -
Clacu09g0089 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 246 IPR013083 -
Clacu09g0089 251 CDD PHD_AL_plant 197 247 IPR044104 -
Clacu09g0089 251 ProSitePatterns Zinc finger PHD-type signature. 198 244 IPR019786 -
Clacu09g0089 251 Pfam Alfin 11 138 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Clacu09g0089 251 PANTHER CPG BINDING PROTEIN 9 250 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g0089 K26274 - - csv:101222322 498.049
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0425 Clacu-Chr7:4965003 Clacu09g0089 Clacu-Chr9:848848 1.20E-91 dispersed
Clacu09g0089 Clacu-Chr9:848848 Clacu10g0742 Clacu-Chr10:10688840 8.90E-95 dispersed
Clacu11g0303 Clacu-Chr11:2748373 Clacu09g0089 Clacu-Chr9:848848 1.30E-109 wgd
Clacu03g1569 Clacu-Chr3:29272895 Clacu09g0089 Clacu-Chr9:848848 1.20E-21 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g122 . . . . . . . . Cmo08g00755 Cmo17g00678 . . . . . Cpe12g00597 Cpe17g00469 . . . . . . . . . . . . . . . . . . Lsi02g02913 Csa07g02370 . Cme01g02823 . . . . . . . . . . . . . Car08g00668 Car17g00661 . . Bhi09g00348 . . . . . . Cla09g00078 Cam09g0081 Cec09g0082 Cco09g0081 Clacu09g0089 . Cre09g0076 . . Chy01g02184 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu10g0742 . 1 252 Alfin-like Transcription Factor Family AT1G14510 84.1 3.9e-114 407.9
Clacu11g0303 . 9 248 Alfin-like Transcription Factor Family AT1G14510 69.7 2.6e-94 342.0
Clacu08g1146 . 143 388 Alfin-like Transcription Factor Family AT1G14510 69.5 1.4e-92 336.3
Clacu09g0089 . 10 248 Alfin-like Transcription Factor Family AT1G14510 67.5 2.4e-92 335.5
Clacu07g0425 . 8 238 Alfin-like Transcription Factor Family AT1G14510 58.9 1.3e-77 286.6
Clacu10g2174 . 1 226 Alfin-like Transcription Factor Family AT1G14510 58.5 2.5e-73 272.3
Clacu11g0303 . 1 250 Alfin-like Transcription Factor Family AT5G26210 76.0 8.1e-112 400.2
Clacu08g1146 . 135 373 Alfin-like Transcription Factor Family AT5G26210 73.0 1.9e-100 362.5
Clacu09g0089 . 1 250 Alfin-like Transcription Factor Family AT5G26210 65.4 1.5e-97 352.8
Clacu10g0742 . 9 255 Alfin-like Transcription Factor Family AT5G26210 72.5 2.6e-94 342.0
Clacu07g0425 . 7 240 Alfin-like Transcription Factor Family AT5G26210 58.3 1.7e-80 296.2
Clacu10g2174 . 1 226 Alfin-like Transcription Factor Family AT5G26210 55.4 2.2e-72 269.2
Clacu11g0303 . 1 250 Alfin-like Transcription Factor Family AT3G42790 70.1 4.9e-101 364.4
Clacu09g0089 . 1 250 Alfin-like Transcription Factor Family AT3G42790 64.1 8.0e-96 347.1
Clacu08g1146 . 135 373 Alfin-like Transcription Factor Family AT3G42790 69.3 1.4e-92 336.3
Clacu10g0742 . 9 255 Alfin-like Transcription Factor Family AT3G42790 72.1 6.0e-91 330.9
Clacu07g0425 . 7 240 Alfin-like Transcription Factor Family AT3G42790 59.8 3.3e-81 298.5
Clacu10g2174 . 9 226 Alfin-like Transcription Factor Family AT3G42790 56.6 2.4e-71 265.8
Clacu07g0425 . 1 240 Alfin-like Transcription Factor Family AT5G05610 78.0 1.2e-112 402.9
Clacu10g2174 . 6 226 Alfin-like Transcription Factor Family AT5G05610 74.3 9.1e-97 350.1
Clacu11g0303 . 8 250 Alfin-like Transcription Factor Family AT5G05610 65.2 5.2e-92 334.3
Clacu09g0089 . 10 250 Alfin-like Transcription Factor Family AT5G05610 64.5 2.2e-90 328.9
Clacu08g1146 . 142 373 Alfin-like Transcription Factor Family AT5G05610 66.4 8.6e-87 317.0
Clacu10g0742 . 9 254 Alfin-like Transcription Factor Family AT5G05610 63.2 3.0e-84 308.5
Clacu07g0425 . 43 240 Alfin-like Transcription Factor Family AT3G11200 80.6 1.3e-95 346.3
Clacu10g2174 . 44 226 Alfin-like Transcription Factor Family AT3G11200 75.4 1.9e-78 289.3
Clacu09g0089 . 44 250 Alfin-like Transcription Factor Family AT3G11200 65.7 4.7e-74 274.6
Clacu11g0303 . 44 250 Alfin-like Transcription Factor Family AT3G11200 64.3 1.4e-73 273.1
Clacu08g1146 . 178 373 Alfin-like Transcription Factor Family AT3G11200 65.8 1.9e-70 262.7
Clacu10g0742 . 44 254 Alfin-like Transcription Factor Family AT3G11200 64.2 7.1e-70 260.8
Clacu10g0742 . 1 161 Alfin-like Transcription Factor Family AT2G02470 85.1 1.5e-76 283.1
Clacu11g0303 . 1 158 Alfin-like Transcription Factor Family AT2G02470 76.6 6.8e-66 247.7
Clacu08g1146 . 135 292 Alfin-like Transcription Factor Family AT2G02470 77.8 4.4e-65 245.0
Clacu09g0089 . 5 160 Alfin-like Transcription Factor Family AT2G02470 75.3 1.4e-63 240.0
Clacu10g2174 . 1 156 Alfin-like Transcription Factor Family AT2G02470 65.4 4.5e-54 208.4
Clacu07g0425 . 8 155 Alfin-like Transcription Factor Family AT2G02470 67.5 1.0e-53 207.2
Clacu08g1146 . 135 301 Alfin-like Transcription Factor Family AT5G20510 77.4 2.5e-73 271.9
Clacu11g0303 . 1 160 Alfin-like Transcription Factor Family AT5G20510 77.0 6.8e-71 263.8
Clacu09g0089 . 1 162 Alfin-like Transcription Factor Family AT5G20510 75.2 9.2e-68 253.4
Clacu10g0742 . 3 172 Alfin-like Transcription Factor Family AT5G20510 71.5 7.8e-67 250.4
Clacu07g0425 . 7 157 Alfin-like Transcription Factor Family AT5G20510 62.4 1.1e-52 203.4
Clacu10g2174 . 8 158 Alfin-like Transcription Factor Family AT5G20510 61.8 3.5e-51 198.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000240 6 20 6 5 4 4 8 4 4 3 3 4 4 3 3 7 4 8 7 3 3 4 4 4 5 2 5 11 7 4 159
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48260 PF12165 Alfin 3.10E-68 No_clan Clacu TF