Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g0089 ATGGATGGAGGTGGCTTAGTGCACAATCGCTCAGTGGAAGATGTTTTCAGTGATTTTAGGGGACGAAGAAACGGCATCATCAAAGCCCTCACCGCAGATGTTGAAGAGTTCTATCAACAATGTGATCCTGAGAAGGAAAATCTATGCTTGTATGGCTTTCCAAATGAAGTATGGGAAGTTAATTTACCTGCTGAAGAAGTACCTCCAGAGCTTCCAGAGCCAGCGTTGGGTATTAATTTTGCAAGAGATGGCATGCAAGAAAGGGATTGGTTGGCATTGGTTGCTGTCCATAGTGATTCTTGGTTGCTCTCTGTTGCCTACTATTTTGGTGCGAGATTTGGATTTGATAAAACTGATAGGAGGCGGCTTTTTAATATGATAAATGATTTGCCAACTGTATTTGAAGTAGTCACAGGTATTGCAAAGAAACAAGTTAAGGAAAAGTCATCAAGTGCTAATGGTAGCAAATCCAAGTCAAGCTTAAAAACGAGGGAAGCTGAAATGCAAGGAATGTATGCTAGGCAGCCGCAGGCAAGGGAAGAGGTAGAGACGTTGTATGAAGAAGATGAAGACGAGCACGGTGACACCTTATGTGGGGCATGTGGTGAGAATTATGCTTCAGATGAATTTTGGATTTGCTGTGATATCTGTGAGAAATGGTTCCATGGGAAGTGTGTTAGAATAACTCCTGCTAAAGCCGAGCACATTAAGCAGTACAAATGCCCATCTTGCAGCAACAAGAGAAGCCGCATTTAA 756 42.59 MDGGGLVHNRSVEDVFSDFRGRRNGIIKALTADVEEFYQQCDPEKENLCLYGFPNEVWEVNLPAEEVPPELPEPALGINFARDGMQERDWLALVAVHSDSWLLSVAYYFGARFGFDKTDRRRLFNMINDLPTVFEVVTGIAKKQVKEKSSSANGSKSKSSLKTREAEMQGMYARQPQAREEVETLYEEDEDEHGDTLCGACGENYASDEFWICCDICEKWFHGKCVRITPAKAEHIKQYKCPSCSNKRSRI 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 848848 851250 - ClG42_09g0008900.10 Clacu09g0089 256397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g0089 251 SMART PHD_3 197 245 IPR001965 -
Clacu09g0089 251 ProSiteProfiles Zinc finger PHD-type profile. 195 247 IPR019787 -
Clacu09g0089 251 SUPERFAMILY FYVE/PHD zinc finger 187 249 IPR011011 -
Clacu09g0089 251 MobiDBLite consensus disorder prediction 147 174 - -
Clacu09g0089 251 FunFam PHD finger alfin-like protein 190 246 - -
Clacu09g0089 251 Pfam PHD-finger 198 244 IPR019787 -
Clacu09g0089 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 246 IPR013083 -
Clacu09g0089 251 CDD PHD_AL_plant 197 247 IPR044104 -
Clacu09g0089 251 ProSitePatterns Zinc finger PHD-type signature. 198 244 IPR019786 -
Clacu09g0089 251 Pfam Alfin 11 138 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Clacu09g0089 251 PANTHER CPG BINDING PROTEIN 9 250 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0425 Clacu-Chr7:4965003 Clacu09g0089 Clacu-Chr9:848848 1.20E-91 dispersed
Clacu09g0089 Clacu-Chr9:848848 Clacu10g0742 Clacu-Chr10:10688840 8.90E-95 dispersed
Clacu11g0303 Clacu-Chr11:2748373 Clacu09g0089 Clacu-Chr9:848848 1.30E-109 wgd
Clacu03g1569 Clacu-Chr3:29272895 Clacu09g0089 Clacu-Chr9:848848 1.20E-21 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48260 PF12165 Alfin 3.10E-68 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g0089 K26274 - csv:101222322 498.049