Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g0107 ATGGGTTTCAAAAAGCTATTCTCTCTAAAATATTTGATACCCAGTTGTTTAAAGCCAAAGAAGCTGCTCACAGGCCCTTCTTCTGCTGGATTTCAAACCTCAAAAAAAATATCTCTTAGAAGAATCTTATCATTGTCTGATATGAGTGTTAGATCATCTTTATCAGTTATTAGTGATCTTTCAAACTCTTGTAATGGTTCAAATCTTCAAATTTTCACCTTTAAAGAACTTGAGGAAGTCACTGAAAACTTCACCAAAAGTAATTATTTGGGTGAAGGAGGATTTGGGCCTGTGTTTAAAGGGTTCATTGAAGACAATTTCAAGCCTGGTTTGAAATCACAGCAAGTGGCTGTGAAGATTTTGGATTTGGATGGCTCTCAAGGCCATAGAGAGTGGCTGGCTGAAGTGTTTTTTCTTGGGCAATTGAGACACCCAAATCTTGTTAATTTGATTGGATATTGTCTTGAAGATGAACAGAGGCTTCTTGTATATGAATATATGGAAGGAGGAAACTTGGAGAATCTGTTGTTTAAATGTTGTTATGTTTCAAATTTGACATGGTTACAAAGGATAAAAATTGCATTAGGATCAGCAAAAGGCCTTGCTTTCTTGCACGAAACCGAAAAACCGATCATTTTTCGAGATTTCAAGGCTTCGAACATCTTACTCGACTCGGATTACAATCCGAAACTTTCAGATTTTGGGTTGGCCATAAATGGTCCCGACGAAGATGATACACATGTAACGACTCGAATCATGGGGACAGAAGGTTATGCGGCCCCAGAATACATCATGACAGGTCATTTGTCAACAATGAGTGATGTGTTCAGCTTTGGGGTGCTTCTATTAGAGTTGCTAACCGGTCGACGAGCGATCGACAAGAATCGACCGAGCCGAGAACAGAACTTGGTGGCTTGGGGAAGACATCTTTTGAAAGATCAACACAAACTTGAAAAGATAATTGATCCAAGGCTTGAGGGGCATTACTCAAATGAAGGGGTTAAAAAATTAGCTACAATAGCTCACCAATGCCTTAGCCACCACCCAAAATGTAGGCCCTCAATGAGCACAGTGGTGAAGGATTTGGAAGTTGTTCTTAACATGAAAGAGTTTCTAACTGAGCCATTTGTGTATATTGTCCCAAGTGAAGAGATGAAAGAGGTGGAGAGACTGGAGAATCGTCATCGGTACGATGACCGAAAAGGTCGAAGCTATAGGCTTCGGGTGTCGTCATCGAGATTGAGATCTGGTGCTGTTCATTCTGATACAGCCTTTATGGAAAATTTATAG 1290 40.0 MGFKKLFSLKYLIPSCLKPKKLLTGPSSAGFQTSKKISLRRILSLSDMSVRSSLSVISDLSNSCNGSNLQIFTFKELEEVTENFTKSNYLGEGGFGPVFKGFIEDNFKPGLKSQQVAVKILDLDGSQGHREWLAEVFFLGQLRHPNLVNLIGYCLEDEQRLLVYEYMEGGNLENLLFKCCYVSNLTWLQRIKIALGSAKGLAFLHETEKPIIFRDFKASNILLDSDYNPKLSDFGLAINGPDEDDTHVTTRIMGTEGYAAPEYIMTGHLSTMSDVFSFGVLLLELLTGRRAIDKNRPSREQNLVAWGRHLLKDQHKLEKIIDPRLEGHYSNEGVKKLATIAHQCLSHHPKCRPSMSTVVKDLEVVLNMKEFLTEPFVYIVPSEEMKEVERLENRHRYDDRKGRSYRLRVSSSRLRSGAVHSDTAFMENL 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 985164 986854 + ClG42_09g0010700.10 Clacu09g0107 256415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g0107 429 Gene3D Phosphorylase Kinase; domain 1 55 166 - -
Clacu09g0107 429 Pfam Protein tyrosine and serine/threonine kinase 87 362 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu09g0107 429 ProSiteProfiles Protein kinase domain profile. 84 377 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g0107 429 Gene3D Transferase(Phosphotransferase) domain 1 167 374 - -
Clacu09g0107 429 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 167 374 - -
Clacu09g0107 429 SUPERFAMILY Protein kinase-like (PK-like) 69 386 IPR011009 -
Clacu09g0107 429 FunFam Serine/threonine-protein kinase BIK1 51 166 - -
Clacu09g0107 429 PANTHER OS01G0588500 PROTEIN-RELATED 60 365 IPR050823 -
Clacu09g0107 429 CDD STKc_IRAK 90 363 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1736 Clacu-Chr5:26302471 Clacu09g0107 Clacu-Chr9:985164 8.00E-109 dispersed
Clacu09g0107 Clacu-Chr9:985164 Clacu10g2251 Clacu-Chr10:35413049 1.90E-105 dispersed
Clacu11g0291 Clacu-Chr11:2663138 Clacu09g0107 Clacu-Chr9:985164 5.10E-121 wgd
Clacu03g1551 Clacu-Chr3:29089308 Clacu09g0107 Clacu-Chr9:985164 4.40E-121 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73799 PF07714 PK_Tyr_Ser-Thr 5.20E-46 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g0107 - - - 0.0