Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu09g0146 | ATGAAAGAGACCGATATAATGGAAAAGCCCATCGCCGCCGGCCTCTCAAATTCCGGCAACCACCACCAAAAGCCCAAAAACAAATCAAAAAAGCTTCTAATTTTAGCCCTGTCTTCGACCCTGCTCCTGGTCGGCGCCGTCGTGGGGATCGTCGCCGGAGTGACGAAATCGGAAAACTCCGGGAAATCACACGCCATTGTGAAGAGCACGTGCAGCAGCACGCTTTACCCGGATCTGTGCTTTTCTGCAATTTCGAATAGTGAAGGGGCTATGTTGAAAGTTAGTAATCAAAAGGATGTGATTGAGGTGTCAATTAATATAACGGTGAAAGCTGTGGAAGATAATTACTTTAGAGTGAAGAAATTGTGTGGGTTGAAGAATATTAGCCATAGAGAGAAAATTGCTCTTCATGATTGTCTTGAGACAATTGATGAGACGCTTGATGAACTTCATAAAGCTATTGTGGACCTTCATCAATACCCCAATAAAAAGTCTCTTAATCAACACGCTGATGATCTTAAAACCTTGCTTAGTTCCGCCATTACCAATCAGGAGACATGCCTCGATGGGTTTTCACACGACGAGGCAGACAAAAACCTGAGGGATAAGCTAAAAGAGGGGCAAGAGGAAGTAGAACACATGTGCAGCAATGCATTAGCCATGATTAAGAACATGACAGATACAGACATAGCCAACTACGAGGCTAAAATGGGAACAACCAACAATAGAAAGCTCAAGGAAGAACAGAACAACGGCGACGGCATCCAGTGGCCGGAGTGGCTGTCGGCCGGAGACCGGCGGCTGCTTCAGTCGTCGTCCGTGGAGCCAGATGTGGTGGTGGCGGCGGACGGCAGTGGGAACTTCCGGACGGTGGCGGCCGCCGTGGCGGCGGCGCCGGAAAAAAGTAGCAAGAGATATGTGATAAGAATTAAAGCTGGGGTTTATAGAGAAAATGTGGAAGTGCCGAAGAAGAAAACGAATATTATGTTTATGGGAGATGGAAGACGTAACACTATAATTACCGGCAGCCGGAATGTGGTCGACGGCAGCACCACTTTTAACTCTGCAACCGTCGCTGCGGTGGGAGGAGGATTTCTAGCGCGTGACATCACATTCCAAAACACAGCCGGTCCGTCGAAGCACCAAGCGGTGGCTCTCCGTGTCGGAGCAGATCTCTCCGCCTTCTACCAATGCGACATGTTGGCTTATCAAGACACTCTCTACGTCCACTCCAACCGTCAATTCTACATCAACTGTCTCATCTCCGGCACCGTCGATTTCATCTTCGGCAACGCTGCCGCCATTTTCCAAGACTGCGACATTCACGCGCGCAAACCAAACTCAGGTCAGAAAAACATGGTCACGGCCCAAGGACGGTCCGACCCGAACCAAAACACCGGAATCGTTATCCAGAAATGCCGGATCGGTGCCACGTCGGATCTCCGACCGGTCCAGAAGAACTTCCCGACGTTCCTTGGAAGGCCGTGGAAGGAATATTCGAGAACGGTGATTATGCAGTCAACGATTAGTGACGTCATTGACCCGAAGGGATGGCATGAGTGGAGCGGTAATTTTGCACTTAACACGTTGTTTTACGGTGAGTATCAGAATACTGGACCGGGGGCTTCAACCGGGGGGAGAGTGACGTGGAAGGGATTTAGGGTAATTCGGAGTGCCACGGAGGCTGAAAGTTTTACCGCAGGTAAATTCATTGGCGGTGGGAGTTGGTTGCGCTCTACTGGCTTTCCTTTCTCTCTAGGATTATGA | 1767 | 49.63 | MKETDIMEKPIAAGLSNSGNHHQKPKNKSKKLLILALSSTLLLVGAVVGIVAGVTKSENSGKSHAIVKSTCSSTLYPDLCFSAISNSEGAMLKVSNQKDVIEVSINITVKAVEDNYFRVKKLCGLKNISHREKIALHDCLETIDETLDELHKAIVDLHQYPNKKSLNQHADDLKTLLSSAITNQETCLDGFSHDEADKNLRDKLKEGQEEVEHMCSNALAMIKNMTDTDIANYEAKMGTTNNRKLKEEQNNGDGIQWPEWLSAGDRRLLQSSSVEPDVVVAADGSGNFRTVAAAVAAAPEKSSKRYVIRIKAGVYRENVEVPKKKTNIMFMGDGRRNTIITGSRNVVDGSTTFNSATVAAVGGGFLARDITFQNTAGPSKHQAVALRVGADLSAFYQCDMLAYQDTLYVHSNRQFYINCLISGTVDFIFGNAAAIFQDCDIHARKPNSGQKNMVTAQGRSDPNQNTGIVIQKCRIGATSDLRPVQKNFPTFLGRPWKEYSRTVIMQSTISDVIDPKGWHEWSGNFALNTLFYGEYQNTGPGASTGGRVTWKGFRVIRSATEAESFTAGKFIGGGSWLRSTGFPFSLGL | 588 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 1364958 | 1370136 | - | ClG42_09g0014600.10 | Clacu09g0146 | 256454 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu09g0146 | 588 | Pfam | Plant invertase/pectin methylesterase inhibitor | 66 | 221 | IPR006501 | GO:0004857(InterPro) | |
| Clacu09g0146 | 588 | ProSitePatterns | Pectinesterase signature 1. | 302 | 321 | IPR018040 | - | |
| Clacu09g0146 | 588 | Pfam | Pectinesterase | 277 | 573 | IPR000070 | GO:0030599(InterPro)|GO:0042545(InterPro) | |
| Clacu09g0146 | 588 | SUPERFAMILY | Pectin lyase-like | 274 | 587 | IPR011050 | - | |
| Clacu09g0146 | 588 | Gene3D | - | 271 | 588 | IPR012334 | - | |
| Clacu09g0146 | 588 | SMART | PMEI_2 | 62 | 221 | IPR006501 | GO:0004857(InterPro) | |
| Clacu09g0146 | 588 | FunFam | Pectinesterase | 271 | 588 | - | - | |
| Clacu09g0146 | 588 | NCBIfam | pectinesterase inhibitor domain | 38 | 225 | IPR006501 | GO:0004857(InterPro) | |
| Clacu09g0146 | 588 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 66 | 226 | IPR035513 | - | |
| Clacu09g0146 | 588 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
| Clacu09g0146 | 588 | PANTHER | PECTINESTERASE | 31 | 579 | - | GO:0030599(PANTHER)|GO:0046910(PANTHER) | |
| Clacu09g0146 | 588 | ProSitePatterns | Pectinesterase signature 2. | 421 | 430 | IPR033131 | - | |
| Clacu09g0146 | 588 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 62 | 226 | IPR035513 | - | |
| Clacu09g0146 | 588 | CDD | PMEI-like_3 | 69 | 226 | - | - | |
| Clacu09g0146 | 588 | FunFam | Pectinesterase | 63 | 226 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu07g1435 | Clacu-Chr7:29062007 | Clacu09g0146 | Clacu-Chr9:1364958 | 8.50E-109 | dispersed | |
| Clacu09g0146 | Clacu-Chr9:1364958 | Clacu09g0865 | Clacu-Chr9:8047339 | 1.10E-172 | dispersed | |
| Clacu01g2289 | Clacu-Chr1:33874233 | Clacu09g0146 | Clacu-Chr9:1364958 | 1.80E-124 | transposed | |
| Clacu07g1434 | Clacu-Chr7:29053467 | Clacu09g0146 | Clacu-Chr9:1364958 | 1.40E-220 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu09g0146 | K01051 | - | csv:101212388 | 1034.25 |