Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g0150 ATGGCGGGAAATGGAACGGAGCGCGATAGCCGAATGGTTCGCGGAGCAAACTCCGGATTCTTTCAGTCATCCGAAGATCGGAATGCTTTGTGTGGTTTGGAGAAAGCTACCGTTCTAGAGCGCATGGCCGGAGATGTTCTAGTGAGTGCGTTTAGCTTGCTTTCAGGTCAGAATACCAATAAGCGTAGCAGTGCGAAGCGATTGAGAAATGGGATAATCAATAAAAGCAGAGTCAATAGATCGTGGCCACCAGAAAAGCTCAAGCTGGCATTGACTCGGTTGAGGGAAGGAAATGGTGCTTATCCGCACCGAGTCGCTCCAGAAGGGTGGAAGCCTAGCTGCATTCAAGGAACCACAGATCCAACAGATGCCTCTGCTTTAAGGGTTTTGTACACCAGTTTAAACTCGCCCTCTCAGTTAACCCAGTGGAACGCAAATGGCGATGATCCTTGTGGACAATCATGGAAGGGAATTACTTGCTCCGGCTCACGGGTTACAGAAATAAACTTATCTGGCCTTGGACTCAGTGGATCGCTCGGATACCAGCTTGGAAGTATGACATCGGTAACCAACCTGGATGTGAGTAGTAACAATTTTGGAGGCGAGATTGTCTACAACCTTCCACCTAATCTAAAAAGACTAAATCTTGCACGAAACAACTTCAATAAAGGCATTCCTTATTCCGTTTCATTGATGACTTCTCTTCAATACTTAAATATCAGTCATAATCAGCTTCAGGATCCATTGAATGATGTGTATGGGCAGCTAACTTCCCTATCCACATTGGATCTATCTTTCAATGCTATGTCAGGCAACCTGCCTCAGAGTTTTAGCTCTCTTTCTAGCATCAGCACTATGTATTTGCAAAACAATCAGTACACTGGCACAATTGATGTCCTTGCAACTCTACCTCTTAATAACCTGAATGTTGAAAATAACCGTTTCACCGGATGGATCCCTGAACAACTGAAAAACATCAATCTGCAGACAAATGGCAACTCTTGGAACTCCGGTCCTGCACCCCCTCCTCCACCTGGTACACCCCCAGCCACCAGAAGAAACCGAAATCAACATTCAGGTGGCAGTCCATCAAATGGTGGTTCTAGTGAAGGTCAGAAATCAGGAATTAGTGGTGGTGGCATTGCAGGGATTATCATCTCCGTGCTCGTCGTTGGAGCTGTAGTAGCATTCTTCCTCGTCAAGAGGAGATCCAAGAGATCATCTACAGATATTGAAAAGCTCGACAATCAACCCCTGCAACCTCTTAAAGTGACTGCAGCACAAGAAACAAAGTCAGAAGAGACTTCCTCCACATTTTATCCAACATCATTTGACACTTCTGCTGCAATAAATCTTAAACCCCCACCTATCGATCGTCATAAATCATTTGATGAAGACGACTTCTCAAAACGAGCTGCAGTCAAGAAGGCTAGTGCTGCAGCTCCCATTAATGTAAAGTCATATTCCATAGCAGACCTTCAAATTGCTACAGGCAGCTTCAATGTTGAAAATCTTCTTGGTGAGGGATCATTTGGACGTGTATATCGGGCTGAGTTTGACGACGGGAAGGTTCTTGCCGTGAAAAAGATAAATTCATCTGCACTACCTAGGGAATTATCTGAAGATTTCACTGACATTGTTTCTAAAGTCTCCCAGTTACACCATCCCAATATAACTGAACTCGTGGGTTATTGCTTAGAGCATGGGCAGCATTTGCTTGTGTATGAGTTCCACAAAAATGGTTCGCTTTACGACTTATTACATCTATCAGATGAATACAACAAACCTCTGATATGGAACTCACGCATTAAGATTGCTTTGGGAACAGCGCGAGCATTGGAGTATCTTCATGAAGTGTGCTCCCCATCTATTGTTCATAGAAACGTCAAGTCTGCTAACATATTGTTAGATGCCGAACTCAGCCCCCACCTTTCTGACTCTGGACTGGAAAGCTTTGTACCAAATGCAGATCAGGCGTTGGATGGCAGTGCAAGTTCAGGATATGCTGCCCCGGAAGTTACCATGTCCGGTCAATATACTCTGCAAAGTGACGTTTACAGTTTTGGAGTAGTCATGTTGGAACTGCTGACTGGACGCAAACCATTCGACAGTTCAAGGGCGAGGATGGAGCAATCTTTGGTTCGATGGGCAACACCTCAGCTTCATGACATTGATGCTTTGACCAAGATGGTTGATCCCGAACTCAAAGGCCTTTACCCCGTTAAATCTCTCTCCCGATTTGCAGATGTGATTGCACTTTGCGTTCAGACGGAACCTGAGTTCAGACCTCCAATGTCGGAGGTGGTCGAAGCGTTGGTCCGTTTGGTGCAGCGAGCAAACATGAGTAAGAGAACATATGGAAATGATAATGCAACATCTCCGAGAGGGGAGATGGGTGGGGAGGACACGCCATAA 2415 45.34 MAGNGTERDSRMVRGANSGFFQSSEDRNALCGLEKATVLERMAGDVLVSAFSLLSGQNTNKRSSAKRLRNGIINKSRVNRSWPPEKLKLALTRLREGNGAYPHRVAPEGWKPSCIQGTTDPTDASALRVLYTSLNSPSQLTQWNANGDDPCGQSWKGITCSGSRVTEINLSGLGLSGSLGYQLGSMTSVTNLDVSSNNFGGEIVYNLPPNLKRLNLARNNFNKGIPYSVSLMTSLQYLNISHNQLQDPLNDVYGQLTSLSTLDLSFNAMSGNLPQSFSSLSSISTMYLQNNQYTGTIDVLATLPLNNLNVENNRFTGWIPEQLKNINLQTNGNSWNSGPAPPPPPGTPPATRRNRNQHSGGSPSNGGSSEGQKSGISGGGIAGIIISVLVVGAVVAFFLVKRRSKRSSTDIEKLDNQPLQPLKVTAAQETKSEETSSTFYPTSFDTSAAINLKPPPIDRHKSFDEDDFSKRAAVKKASAAAPINVKSYSIADLQIATGSFNVENLLGEGSFGRVYRAEFDDGKVLAVKKINSSALPRELSEDFTDIVSKVSQLHHPNITELVGYCLEHGQHLLVYEFHKNGSLYDLLHLSDEYNKPLIWNSRIKIALGTARALEYLHEVCSPSIVHRNVKSANILLDAELSPHLSDSGLESFVPNADQALDGSASSGYAAPEVTMSGQYTLQSDVYSFGVVMLELLTGRKPFDSSRARMEQSLVRWATPQLHDIDALTKMVDPELKGLYPVKSLSRFADVIALCVQTEPEFRPPMSEVVEALVRLVQRANMSKRTYGNDNATSPRGEMGGEDTP 804
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1426123 1438909 - ClG42_09g0015000.10 Clacu09g0150 256458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g0150 804 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 120 346 - -
Clacu09g0150 804 Gene3D Phosphorylase Kinase; domain 1 463 577 - -
Clacu09g0150 804 SUPERFAMILY Protein kinase-like (PK-like) 483 772 IPR011009 -
Clacu09g0150 804 ProSitePatterns Protein kinases ATP-binding region signature. 506 529 IPR017441 GO:0005524(InterPro)
Clacu09g0150 804 Pfam Leucine Rich repeat 186 205 IPR001611 GO:0005515(InterPro)
Clacu09g0150 804 Pfam Leucine Rich repeat 233 247 IPR001611 GO:0005515(InterPro)
Clacu09g0150 804 MobiDBLite consensus disorder prediction 784 804 - -
Clacu09g0150 804 Gene3D Ribonuclease Inhibitor 120 347 IPR032675 -
Clacu09g0150 804 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 464 577 - -
Clacu09g0150 804 Pfam Protein tyrosine and serine/threonine kinase 502 772 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu09g0150 804 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 578 786 - -
Clacu09g0150 804 MobiDBLite consensus disorder prediction 329 375 - -
Clacu09g0150 804 ProSiteProfiles Protein kinase domain profile. 500 775 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g0150 804 CDD STKc_IRAK 506 775 - -
Clacu09g0150 804 Pfam Leucine rich repeat N-terminal domain 121 161 IPR013210 -
Clacu09g0150 804 MobiDBLite consensus disorder prediction 351 375 - -
Clacu09g0150 804 Gene3D Transferase(Phosphotransferase) domain 1 579 794 - -
Clacu09g0150 804 Pfam Leucine Rich Repeat 258 280 IPR001611 GO:0005515(InterPro)
Clacu09g0150 804 SUPERFAMILY L domain-like 119 325 - -
Clacu09g0150 804 PANTHER LEUCINE RICH REPEAT KINASE 2 382 774 IPR051420 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g0628 Clacu-Chr8:14696926 Clacu09g0150 Clacu-Chr9:1426123 4.50E-136 dispersed
Clacu09g0150 Clacu-Chr9:1426123 Clacu05g0679 Clacu-Chr5:5690129 3.50E-68 dispersed
Clacu10g1722 Clacu-Chr10:30744889 Clacu09g0150 Clacu-Chr9:1426123 2.00E-94 transposed
Clacu07g1427 Clacu-Chr7:29013938 Clacu09g0150 Clacu-Chr9:1426123 9.60E-187 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73800 PF07714 PK_Tyr_Ser-Thr 3.30E-42 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g0150 - - - 0.0