Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g0150 ATGGCGGGAAATGGAACGGAGCGCGATAGCCGAATGGTTCGCGGAGCAAACTCCGGATTCTTTCAGTCATCCGAAGATCGGAATGCTTTGTGTGGTTTGGAGAAAGCTACCGTTCTAGAGCGCATGGCCGGAGATGTTCTAGTGAGTGCGTTTAGCTTGCTTTCAGGTCAGAATACCAATAAGCGTAGCAGTGCGAAGCGATTGAGAAATGGGATAATCAATAAAAGCAGAGTCAATAGATCGTGGCCACCAGAAAAGCTCAAGCTGGCATTGACTCGGTTGAGGGAAGGAAATGGTGCTTATCCGCACCGAGTCGCTCCAGAAGGGTGGAAGCCTAGCTGCATTCAAGGAACCACAGATCCAACAGATGCCTCTGCTTTAAGGGTTTTGTACACCAGTTTAAACTCGCCCTCTCAGTTAACCCAGTGGAACGCAAATGGCGATGATCCTTGTGGACAATCATGGAAGGGAATTACTTGCTCCGGCTCACGGGTTACAGAAATAAACTTATCTGGCCTTGGACTCAGTGGATCGCTCGGATACCAGCTTGGAAGTATGACATCGGTAACCAACCTGGATGTGAGTAGTAACAATTTTGGAGGCGAGATTGTCTACAACCTTCCACCTAATCTAAAAAGACTAAATCTTGCACGAAACAACTTCAATAAAGGCATTCCTTATTCCGTTTCATTGATGACTTCTCTTCAATACTTAAATATCAGTCATAATCAGCTTCAGGATCCATTGAATGATGTGTATGGGCAGCTAACTTCCCTATCCACATTGGATCTATCTTTCAATGCTATGTCAGGCAACCTGCCTCAGAGTTTTAGCTCTCTTTCTAGCATCAGCACTATGTATTTGCAAAACAATCAGTACACTGGCACAATTGATGTCCTTGCAACTCTACCTCTTAATAACCTGAATGTTGAAAATAACCGTTTCACCGGATGGATCCCTGAACAACTGAAAAACATCAATCTGCAGACAAATGGCAACTCTTGGAACTCCGGTCCTGCACCCCCTCCTCCACCTGGTACACCCCCAGCCACCAGAAGAAACCGAAATCAACATTCAGGTGGCAGTCCATCAAATGGTGGTTCTAGTGAAGGTCAGAAATCAGGAATTAGTGGTGGTGGCATTGCAGGGATTATCATCTCCGTGCTCGTCGTTGGAGCTGTAGTAGCATTCTTCCTCGTCAAGAGGAGATCCAAGAGATCATCTACAGATATTGAAAAGCTCGACAATCAACCCCTGCAACCTCTTAAAGTGACTGCAGCACAAGAAACAAAGTCAGAAGAGACTTCCTCCACATTTTATCCAACATCATTTGACACTTCTGCTGCAATAAATCTTAAACCCCCACCTATCGATCGTCATAAATCATTTGATGAAGACGACTTCTCAAAACGAGCTGCAGTCAAGAAGGCTAGTGCTGCAGCTCCCATTAATGTAAAGTCATATTCCATAGCAGACCTTCAAATTGCTACAGGCAGCTTCAATGTTGAAAATCTTCTTGGTGAGGGATCATTTGGACGTGTATATCGGGCTGAGTTTGACGACGGGAAGGTTCTTGCCGTGAAAAAGATAAATTCATCTGCACTACCTAGGGAATTATCTGAAGATTTCACTGACATTGTTTCTAAAGTCTCCCAGTTACACCATCCCAATATAACTGAACTCGTGGGTTATTGCTTAGAGCATGGGCAGCATTTGCTTGTGTATGAGTTCCACAAAAATGGTTCGCTTTACGACTTATTACATCTATCAGATGAATACAACAAACCTCTGATATGGAACTCACGCATTAAGATTGCTTTGGGAACAGCGCGAGCATTGGAGTATCTTCATGAAGTGTGCTCCCCATCTATTGTTCATAGAAACGTCAAGTCTGCTAACATATTGTTAGATGCCGAACTCAGCCCCCACCTTTCTGACTCTGGACTGGAAAGCTTTGTACCAAATGCAGATCAGGCGTTGGATGGCAGTGCAAGTTCAGGATATGCTGCCCCGGAAGTTACCATGTCCGGTCAATATACTCTGCAAAGTGACGTTTACAGTTTTGGAGTAGTCATGTTGGAACTGCTGACTGGACGCAAACCATTCGACAGTTCAAGGGCGAGGATGGAGCAATCTTTGGTTCGATGGGCAACACCTCAGCTTCATGACATTGATGCTTTGACCAAGATGGTTGATCCCGAACTCAAAGGCCTTTACCCCGTTAAATCTCTCTCCCGATTTGCAGATGTGATTGCACTTTGCGTTCAGACGGAACCTGAGTTCAGACCTCCAATGTCGGAGGTGGTCGAAGCGTTGGTCCGTTTGGTGCAGCGAGCAAACATGAGTAAGAGAACATATGGAAATGATAATGCAACATCTCCGAGAGGGGAGATGGGTGGGGAGGACACGCCATAA 2415 45.34 MAGNGTERDSRMVRGANSGFFQSSEDRNALCGLEKATVLERMAGDVLVSAFSLLSGQNTNKRSSAKRLRNGIINKSRVNRSWPPEKLKLALTRLREGNGAYPHRVAPEGWKPSCIQGTTDPTDASALRVLYTSLNSPSQLTQWNANGDDPCGQSWKGITCSGSRVTEINLSGLGLSGSLGYQLGSMTSVTNLDVSSNNFGGEIVYNLPPNLKRLNLARNNFNKGIPYSVSLMTSLQYLNISHNQLQDPLNDVYGQLTSLSTLDLSFNAMSGNLPQSFSSLSSISTMYLQNNQYTGTIDVLATLPLNNLNVENNRFTGWIPEQLKNINLQTNGNSWNSGPAPPPPPGTPPATRRNRNQHSGGSPSNGGSSEGQKSGISGGGIAGIIISVLVVGAVVAFFLVKRRSKRSSTDIEKLDNQPLQPLKVTAAQETKSEETSSTFYPTSFDTSAAINLKPPPIDRHKSFDEDDFSKRAAVKKASAAAPINVKSYSIADLQIATGSFNVENLLGEGSFGRVYRAEFDDGKVLAVKKINSSALPRELSEDFTDIVSKVSQLHHPNITELVGYCLEHGQHLLVYEFHKNGSLYDLLHLSDEYNKPLIWNSRIKIALGTARALEYLHEVCSPSIVHRNVKSANILLDAELSPHLSDSGLESFVPNADQALDGSASSGYAAPEVTMSGQYTLQSDVYSFGVVMLELLTGRKPFDSSRARMEQSLVRWATPQLHDIDALTKMVDPELKGLYPVKSLSRFADVIALCVQTEPEFRPPMSEVVEALVRLVQRANMSKRTYGNDNATSPRGEMGGEDTP 804
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1426123 1438909 - ClG42_09g0015000.10 Clacu09g0150 256458

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g0150 804 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 120 346 - -
Clacu09g0150 804 Gene3D Phosphorylase Kinase; domain 1 463 577 - -
Clacu09g0150 804 SUPERFAMILY Protein kinase-like (PK-like) 483 772 IPR011009 -
Clacu09g0150 804 ProSitePatterns Protein kinases ATP-binding region signature. 506 529 IPR017441 GO:0005524(InterPro)
Clacu09g0150 804 Pfam Leucine Rich repeat 186 205 IPR001611 GO:0005515(InterPro)
Clacu09g0150 804 Pfam Leucine Rich repeat 233 247 IPR001611 GO:0005515(InterPro)
Clacu09g0150 804 MobiDBLite consensus disorder prediction 784 804 - -
Clacu09g0150 804 Gene3D Ribonuclease Inhibitor 120 347 IPR032675 -
Clacu09g0150 804 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 464 577 - -
Clacu09g0150 804 Pfam Protein tyrosine and serine/threonine kinase 502 772 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu09g0150 804 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 578 786 - -
Clacu09g0150 804 MobiDBLite consensus disorder prediction 329 375 - -
Clacu09g0150 804 ProSiteProfiles Protein kinase domain profile. 500 775 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g0150 804 CDD STKc_IRAK 506 775 - -
Clacu09g0150 804 Pfam Leucine rich repeat N-terminal domain 121 161 IPR013210 -
Clacu09g0150 804 MobiDBLite consensus disorder prediction 351 375 - -
Clacu09g0150 804 Gene3D Transferase(Phosphotransferase) domain 1 579 794 - -
Clacu09g0150 804 Pfam Leucine Rich Repeat 258 280 IPR001611 GO:0005515(InterPro)
Clacu09g0150 804 SUPERFAMILY L domain-like 119 325 - -
Clacu09g0150 804 PANTHER LEUCINE RICH REPEAT KINASE 2 382 774 IPR051420 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g0150 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g0628 Clacu-Chr8:14696926 Clacu09g0150 Clacu-Chr9:1426123 4.50E-136 dispersed
Clacu09g0150 Clacu-Chr9:1426123 Clacu05g0679 Clacu-Chr5:5690129 3.50E-68 dispersed
Clacu10g1722 Clacu-Chr10:30744889 Clacu09g0150 Clacu-Chr9:1426123 2.00E-94 transposed
Clacu07g1427 Clacu-Chr7:29013938 Clacu09g0150 Clacu-Chr9:1426123 9.60E-187 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu02g0132 . 34 786 Strubbelig Receptor Gene Family AT4G03390 62.5 6.5e-205 711.1
Clacu01g2355 . 17 731 Strubbelig Receptor Gene Family AT4G03390 54.1 1.6e-155 547.0
Clacu09g0150 . 484 778 Strubbelig Receptor Gene Family AT4G03390 58.4 7.5e-92 335.5
Clacu10g1722 . 1 726 Strubbelig Receptor Gene Family AT5G06820 53.5 3.8e-186 648.7
Clacu08g0628 . 22 707 Strubbelig Receptor Gene Family AT1G78980 60.4 1.8e-193 672.9
Clacu09g0150 . 115 781 Strubbelig Receptor Gene Family AT1G78980 50.1 1.3e-122 437.6
Clacu08g0628 . 20 685 Strubbelig Receptor Gene Family AT3G13065 54.4 6.5e-148 521.5
Clacu01g0988 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.2 1.3e-84 311.2
Clacu10g1722 . 1 726 Strubbelig Receptor Gene Family AT5G06820 53.5 3.8e-186 648.7
Clacu02g0132 . 34 786 Strubbelig Receptor Gene Family AT4G03390 62.5 6.5e-205 711.1
Clacu01g2355 . 17 731 Strubbelig Receptor Gene Family AT4G03390 54.1 1.6e-155 547.0
Clacu09g0150 . 484 778 Strubbelig Receptor Gene Family AT4G03390 58.4 7.5e-92 335.5
Clacu08g0628 . 20 685 Strubbelig Receptor Gene Family AT3G13065 54.4 6.5e-148 521.5
Clacu08g0628 . 22 707 Strubbelig Receptor Gene Family AT1G78980 60.4 1.8e-193 672.9
Clacu09g0150 . 115 781 Strubbelig Receptor Gene Family AT1G78980 50.1 1.3e-122 437.6
Clacu09g0150 . 109 803 Strubbelig Receptor Gene Family AT1G53730 61.1 1.7e-183 639.8
Clacu07g1427 . 103 916 Strubbelig Receptor Gene Family AT1G53730 51.0 3.2e-182 635.6
Clacu08g0628 . 20 693 Strubbelig Receptor Gene Family AT1G53730 50.4 1.3e-154 543.9
Clacu01g0988 . 7 689 Strubbelig Receptor Gene Family AT1G53730 50.9 4.4e-147 518.8
Clacu09g0150 . 109 793 Strubbelig Receptor Gene Family AT3G14350 55.5 2.2e-164 576.2
Clacu01g0988 . 201 711 Strubbelig Receptor Gene Family AT4G22130 68.2 4.2e-177 618.2
Clacu07g1427 . 595 923 Strubbelig Receptor Gene Family AT4G22130 63.4 4.7e-120 428.7
Clacu09g0150 . 482 795 Strubbelig Receptor Gene Family AT4G22130 64.6 6.4e-117 418.3
Clacu02g0132 . 485 796 Strubbelig Receptor Gene Family AT4G22130 58.8 6.0e-107 385.2
Clacu08g0628 . 360 707 Strubbelig Receptor Gene Family AT4G22130 52.4 1.2e-99 360.9
Clacu10g1722 . 387 709 Strubbelig Receptor Gene Family AT4G22130 51.7 9.2e-92 334.7
Clacu01g2355 . 464 731 Strubbelig Receptor Gene Family AT4G22130 60.0 1.3e-90 330.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001486 0 7 2 3 1 2 4 1 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 1 1 2 2 1 1 1 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73800 PF07714 PK_Tyr_Ser-Thr 3.30E-42 CL0016 Clacu PK