Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu09g0166 | ATGGACAGTATTCATGCGAGCGATGGACGGATGCATATTAGCCATGCACAGCATTCGATGCACACGCAATCGGTGCAAGACCAGGAACATCATGACTTGCATTACATGAGTAATGGGAATGGACTGGCTGATGAACATGAAAATGAAGGTCATGGTATTATGGTTGTGGAAAGGGAAGTTCAATCGGACCATGGCGATCTTGCAGAGAATCGTGGTGTAATGGTGGATCGAGGAGGAGATAACTGCGACCAGCTCACCCTGTCTTATCAGGGTCAAGTTTATGTTTTCGATTCTGTCTCGCCCGAAAAGGTTCAAGCCGTATTATTGTTATTGGGAGGTCGTGAAGTACCTTTGCGTGTTCCATCAATCCCAATAACTAATCAACAGAATGATAGGCATCTCACTGATGAAGCGTTTAACCAGGCACTTGCCAATATCCCCCCACGTCTAAGTGTCCCTCAGAGATTAGCTTCTTTGATTAGATTTCGTGAAAAGCGAAAGGAGCGTAATTTTGACAAGAAAATTCGGTATACAGTTCGTAAAGAGGTAGCACTTAGGATGCAGCGTAATAAAGGCCAGTTCACATCTTCTAAACCCATCCATGAAGATTCATCATTGGCCATAGCGAGTTGGGAACCAAATGAGAGTTGGAGTAGTGATGGAAATGGATCCCAACAACAAGAAATTCTCTGCCGACATTGTGGTATTAGTGAGAAATCAACACCAATGATGCGACGTGGACCTGATGGGCCAAGAACCCTTTGCAATGCTTGCGGACTCATGTGGGCAAACAAGATTGATCTTTCTTGGCCTCTGACATTTGTTGCAAGCATGGGCAATAATCTACCGCTTATTTCAGTCTTCCCCTCAATGACCAACCACCCTAGATCCTTTTCTTTCTGGGCTCTTACCACCTTGAAAATTGAGATCCTTGATGGAGCGTCTTCGAAGTCCTTGCAGCATAAATTCTTCAAGAAATGGATTCCAATCAGTATGGATGACGTGCAGAGGTTATTCCATTCTATGTTGGGATTAAGAGGCAGCATAGCGACTCTTATGGAGGGGTTAGAATTAGACGGCATGGATGTGAATATTTTGAGGATGATTCAAGGGGTTAAGGTAGCTACTAAGTGGGAATACAGAGAAATCCTTGTATCTTCTAAGCTGGCCAATGCATCTTGGGATCAAGGGCACCGGTATCCAATGGCTGACACTAACGTTAGGGTTGAATCAAATCTGGTCTGA | 1245 | 44.34 | MDSIHASDGRMHISHAQHSMHTQSVQDQEHHDLHYMSNGNGLADEHENEGHGIMVVEREVQSDHGDLAENRGVMVDRGGDNCDQLTLSYQGQVYVFDSVSPEKVQAVLLLLGGREVPLRVPSIPITNQQNDRHLTDEAFNQALANIPPRLSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKPIHEDSSLAIASWEPNESWSSDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANKIDLSWPLTFVASMGNNLPLISVFPSMTNHPRSFSFWALTTLKIEILDGASSKSLQHKFFKKWIPISMDDVQRLFHSMLGLRGSIATLMEGLELDGMDVNILRMIQGVKVATKWEYREILVSSKLANASWDQGHRYPMADTNVRVESNLV | 414 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 1556643 | 1562168 | + | ClG42_09g0016600.10 | Clacu09g0166 | 256474 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu09g0166 | 414 | PANTHER | GATA TRANSCRIPTION FACTOR 28 | 29 | 267 | IPR045280 | GO:0006355(InterPro) | |
Clacu09g0166 | 414 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 226 | 265 | - | - | |
Clacu09g0166 | 414 | Gene3D | - | 217 | 271 | IPR013088 | GO:0006355(InterPro)|GO:0008270(InterPro) | |
Clacu09g0166 | 414 | Pfam | CCT motif | 155 | 197 | IPR010402 | GO:0005515(InterPro) | |
Clacu09g0166 | 414 | ProSiteProfiles | Tify domain profile. | 78 | 113 | IPR010399 | - | |
Clacu09g0166 | 414 | SMART | GATA_3 | 225 | 282 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Clacu09g0166 | 414 | ProSiteProfiles | CCT domain profile. | 155 | 197 | IPR010402 | GO:0005515(InterPro) | |
Clacu09g0166 | 414 | Pfam | tify domain | 84 | 112 | IPR010399 | - | |
Clacu09g0166 | 414 | CDD | ZnF_GATA | 231 | 265 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Clacu09g0166 | 414 | ProSitePatterns | GATA-type zinc finger domain. | 231 | 258 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Clacu09g0166 | 414 | SMART | tify_2 | 78 | 113 | IPR010399 | - | |
Clacu09g0166 | 414 | Pfam | GATA zinc finger | 231 | 265 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu09g0166 | Clacu-Chr9:1556643 | Clacu09g1682 | Clacu-Chr9:30012401 | 2.20E-50 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48268 | PF06203 | CCT | 1.30E-14 | CL0281 | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu09g0166 | - | - | - | 0.0 |