Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g0166 ATGGACAGTATTCATGCGAGCGATGGACGGATGCATATTAGCCATGCACAGCATTCGATGCACACGCAATCGGTGCAAGACCAGGAACATCATGACTTGCATTACATGAGTAATGGGAATGGACTGGCTGATGAACATGAAAATGAAGGTCATGGTATTATGGTTGTGGAAAGGGAAGTTCAATCGGACCATGGCGATCTTGCAGAGAATCGTGGTGTAATGGTGGATCGAGGAGGAGATAACTGCGACCAGCTCACCCTGTCTTATCAGGGTCAAGTTTATGTTTTCGATTCTGTCTCGCCCGAAAAGGTTCAAGCCGTATTATTGTTATTGGGAGGTCGTGAAGTACCTTTGCGTGTTCCATCAATCCCAATAACTAATCAACAGAATGATAGGCATCTCACTGATGAAGCGTTTAACCAGGCACTTGCCAATATCCCCCCACGTCTAAGTGTCCCTCAGAGATTAGCTTCTTTGATTAGATTTCGTGAAAAGCGAAAGGAGCGTAATTTTGACAAGAAAATTCGGTATACAGTTCGTAAAGAGGTAGCACTTAGGATGCAGCGTAATAAAGGCCAGTTCACATCTTCTAAACCCATCCATGAAGATTCATCATTGGCCATAGCGAGTTGGGAACCAAATGAGAGTTGGAGTAGTGATGGAAATGGATCCCAACAACAAGAAATTCTCTGCCGACATTGTGGTATTAGTGAGAAATCAACACCAATGATGCGACGTGGACCTGATGGGCCAAGAACCCTTTGCAATGCTTGCGGACTCATGTGGGCAAACAAGATTGATCTTTCTTGGCCTCTGACATTTGTTGCAAGCATGGGCAATAATCTACCGCTTATTTCAGTCTTCCCCTCAATGACCAACCACCCTAGATCCTTTTCTTTCTGGGCTCTTACCACCTTGAAAATTGAGATCCTTGATGGAGCGTCTTCGAAGTCCTTGCAGCATAAATTCTTCAAGAAATGGATTCCAATCAGTATGGATGACGTGCAGAGGTTATTCCATTCTATGTTGGGATTAAGAGGCAGCATAGCGACTCTTATGGAGGGGTTAGAATTAGACGGCATGGATGTGAATATTTTGAGGATGATTCAAGGGGTTAAGGTAGCTACTAAGTGGGAATACAGAGAAATCCTTGTATCTTCTAAGCTGGCCAATGCATCTTGGGATCAAGGGCACCGGTATCCAATGGCTGACACTAACGTTAGGGTTGAATCAAATCTGGTCTGA 1245 44.34 MDSIHASDGRMHISHAQHSMHTQSVQDQEHHDLHYMSNGNGLADEHENEGHGIMVVEREVQSDHGDLAENRGVMVDRGGDNCDQLTLSYQGQVYVFDSVSPEKVQAVLLLLGGREVPLRVPSIPITNQQNDRHLTDEAFNQALANIPPRLSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKPIHEDSSLAIASWEPNESWSSDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANKIDLSWPLTFVASMGNNLPLISVFPSMTNHPRSFSFWALTTLKIEILDGASSKSLQHKFFKKWIPISMDDVQRLFHSMLGLRGSIATLMEGLELDGMDVNILRMIQGVKVATKWEYREILVSSKLANASWDQGHRYPMADTNVRVESNLV 414
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 1556643 1562168 + ClG42_09g0016600.10 Clacu09g0166 256474
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g0166 414 PANTHER GATA TRANSCRIPTION FACTOR 28 29 267 IPR045280 GO:0006355(InterPro)
Clacu09g0166 414 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 226 265 - -
Clacu09g0166 414 Gene3D - 217 271 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Clacu09g0166 414 Pfam CCT motif 155 197 IPR010402 GO:0005515(InterPro)
Clacu09g0166 414 ProSiteProfiles Tify domain profile. 78 113 IPR010399 -
Clacu09g0166 414 SMART GATA_3 225 282 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu09g0166 414 ProSiteProfiles CCT domain profile. 155 197 IPR010402 GO:0005515(InterPro)
Clacu09g0166 414 Pfam tify domain 84 112 IPR010399 -
Clacu09g0166 414 CDD ZnF_GATA 231 265 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu09g0166 414 ProSitePatterns GATA-type zinc finger domain. 231 258 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu09g0166 414 SMART tify_2 78 113 IPR010399 -
Clacu09g0166 414 Pfam GATA zinc finger 231 265 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu09g0166 Clacu-Chr9:1556643 Clacu09g1682 Clacu-Chr9:30012401 2.20E-50 dispersed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48268 PF06203 CCT 1.30E-14 CL0281 Clacu TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g0166 - - - 0.0