Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g0169 ATGCCGTCCGTCTATGGAGCTCGTGTGACCACTTTTGAAGACTCTGAGAAGGAAAGCGAGTATGGATATGTCCGGAAGGTATCTGGACCAGTCGTCGTGGCAGATGGCATGGGAGGTGCAGCCATGTATGAATTGGTTCGTGTTGGTCATGATAATCTGATTGGTGAAATCATTAGGTTAGAAGGAGATTCTGCCACTATTCAGGTTTATGAGGAAACTGCTGGTTTGATGGTGAATGACCCTGTCTTACGTACTCATAAACCTTTGTCAGTGGAGTTGGGACCTGGAATACTGGGAAATATATTTGATGGCATTCAGAGGCCATTGAAAACAATTGCAAAGAGATCAGGGGATGTCTACATTCCTCGTGGTGTCGCTGTCCCGGCACTGGACAAAGACATACTTTGGGATTTTCAACCCAAAAAACTAGGTGAGGGCGACTTATTGACAGGTGGAGACTTATATGCAACTGTCTTCGAGAATAGTCTAATGGAGCACCACATTGCACTTCCTCCTGATGCTATGGGGAAAATTACCTATATTGCAGCGCCTGGCCAATATTCATTGAAGGATACTGTTTTAGAGCTCGAGTTTCAAGGAGTTAAAAAGCAATTTACCATGCTTCAGACTTGGCCTGTGCGTACTCCTAGACCAGTTGCATCGAAGCTTGCAGCTGATACCCCTCTTTTGACCGGGCAGCGTGTTCTTGATGCACTCTTCCCGTCCGTTCTTGGTGGGACATGTGCCATTCCTGGAGCATTTGGTTGTGGAAAAACAGTCATTAGTCAAGCTCTCTCTAAATATTCAAATTCTGATACTGTGGTGTATGTTGGTTGTGGAGAGAGAGGAAATGAAATGGCTGAAGTTCTTATGGATTTTCCTCAATTGACAATGACATTGCCTGACGGGCGTGAGGAATCTGTCATGAAGCGTACCACTCTTGTGGCTAACACTTCTAATATGCCTGTGGCTGCTCGTGAAGCTTCAATTTATACTGGAATTACTTTGGCCGAATACTTCAGAGATATGGGATACAATGTAAGCATGATGGCAGATTCAACATCTCGATGGGCAGAAGCACTTCGTGAAATATCTGGACGACTGGCAGAAATGCCAGCAGATAGTGGATATCCTGCCTACCTAGCGGCACGTTTAGCCTCTTTCTATGAGCGTGCTGGTAAAGTGAAGTGTCTTGGTGGGCCAGAACGAACTGGCAGTGTTACCATTGTCGGTGCAGTTTCTCCCCCTGGAGGAGATTTCTCTGATCCAGTGACGTCTGCCACCCTCAGTATTGTCCAGGTTTTCTGGGGTCTAGATAAGAAGCTTGCCCAGAGGAAGCACTTCCCTTCCGTGAATTGGCTAATTTCATACTCAAAATACTCTTCTGCGTTGGAATCTTTCTATGAGAAGTTTGATCCAGATTTTATTAACATCAGAACGAAGGCTCGTGAAGTCCTTCAGAGGGAAGATGACCTCAATGAAATTGTCCAACTTGTAGGAAAGGATGCCTTGGCTGAAGGAGATAAGATTACCTTAGAGACTGCAAAGCTTTTGAGGGAGGACTATCTTGCTCAGAATGCATTTACTCCGTATGATAAATTCTGCCCCTTCTACAAGTCGGTCTGGATGATGCGTAATATCATTCATTTCTACAATTTGGCTAATCAGGCAGTAGAGAGGGGAGCGGGTATGGATGGCCAAAAGATAACATACAGTTTGATTAAGCATCGGTTGGGAGATCTGTTCTATCGCCTGGTGTCTCAGAAGTTCGAGGATCCAGCTGAAGGAGAAGCAGCTCTCACTGAAAAATTTAAGAAGCTACATGAAGATCTGACAAATGGTTTCCGTGCTCTCGAGGACGAAACCCGGTAG 1872 45.3 MPSVYGARVTTFEDSEKESEYGYVRKVSGPVVVADGMGGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAKRSGDVYIPRGVAVPALDKDILWDFQPKKLGEGDLLTGGDLYATVFENSLMEHHIALPPDAMGKITYIAAPGQYSLKDTVLELEFQGVKKQFTMLQTWPVRTPRPVASKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITLAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSSALESFYEKFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVERGAGMDGQKITYSLIKHRLGDLFYRLVSQKFEDPAEGEAALTEKFKKLHEDLTNGFRALEDETR 623
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 1580197 1585972 - ClG42_09g0016900.10 Clacu09g0169 256477

Annotation


Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g0169 623 FunFam V-type proton ATPase catalytic subunit A 134 205 - -
Clacu09g0169 623 Pfam ATP synthase alpha/beta family, beta-barrel domain 25 85 IPR004100 GO:0046034(InterPro)|GO:1902600(InterPro)
Clacu09g0169 623 Gene3D - 134 205 - -
Clacu09g0169 623 FunFam V-type proton ATPase catalytic subunit A 20 89 - -
Clacu09g0169 623 Gene3D - 20 89 IPR023366 -
Clacu09g0169 623 Pfam C-terminal domain of V and A type ATP synthase 466 561 - -
Clacu09g0169 623 NCBIfam V-type ATPase subunit A 20 611 IPR005725 GO:0016887(InterPro)|GO:0033180(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Clacu09g0169 623 PANTHER V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A 11 620 IPR022878 GO:0000325(PANTHER)|GO:0046034(InterPro)|GO:0046961(PANTHER)|GO:0046961(InterPro)|GO:1902600(PANTHER)
Clacu09g0169 623 CDD ATP-synt_V_A-type_alpha_N 21 87 - -
Clacu09g0169 623 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 17 89 IPR036121 GO:0046034(InterPro)|GO:1902600(InterPro)
Clacu09g0169 623 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 471 553 - -
Clacu09g0169 623 Gene3D - 459 615 IPR024034 -
Clacu09g0169 623 Hamap V-type ATP synthase alpha chain [atpA]. 19 622 IPR022878 GO:0046034(InterPro)|GO:0046961(InterPro)
Clacu09g0169 623 CDD V_A-ATPase_A 88 460 - -
Clacu09g0169 623 FunFam V-type proton ATPase catalytic subunit A 459 612 - -
Clacu09g0169 623 CDD ATP-synt_V_A-type_alpha_C 475 581 - -
Clacu09g0169 623 FunFam V-type proton ATPase catalytic subunit A 192 457 - -
Clacu09g0169 623 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 232 458 IPR000194 GO:0005524(InterPro)
Clacu09g0169 623 Pfam ATPsynthase alpha/beta subunit N-term extension 102 223 IPR031686 -
Clacu09g0169 623 ProSitePatterns ATP synthase alpha and beta subunits signature. 449 458 IPR020003 GO:0005524(InterPro)
Clacu09g0169 623 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 202 463 IPR027417 -
Clacu09g0169 623 Gene3D - 91 457 IPR027417 -
       

Pathway


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g0169 K02145 - - csv:101216234 1211.44
       

Syn-Families


Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu08g1822 . 193 1190 Primary Pumps ATPases(2) AT1G10130 83.2 0.0e+00 1628.2
Clacu02g2138 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.8 0.0e+00 1347.0
Clacu08g1622 . 1 802 Primary Pumps ATPases(2) AT2G28520 63.2 4.1e-298 1020.8
Clacu02g0509 . 10 813 Primary Pumps ATPases(2) AT2G28520 62.8 1.1e-292 1002.7
Clacu02g0509 . 6 818 Primary Pumps ATPases(2) AT2G21410 75.7 0.0e+00 1233.8
Clacu08g1622 . 1 807 Primary Pumps ATPases(2) AT2G21410 73.5 0.0e+00 1195.3
Clacu02g2138 . 9 818 Primary Pumps ATPases(2) AT2G21410 62.5 8.2e-299 1023.1
Clacu02g0509 . 8 818 Primary Pumps ATPases(2) AT4G39080 76.9 0.0e+00 1235.7
Clacu08g1622 . 1 807 Primary Pumps ATPases(2) AT4G39080 74.2 0.0e+00 1192.6
Clacu02g2138 . 9 818 Primary Pumps ATPases(2) AT4G39080 63.4 9.1e-298 1019.6
Clacu08g1611 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Clacu08g1612 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Clacu11g1754 . 136 273 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Clacu08g1611 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.4e-66 249.6
Clacu08g1612 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.4e-66 249.6
Clacu11g1754 . 110 273 Primary Pumps ATPases(2) AT1G75630 80.3 3.1e-66 248.4
Clacu08g1611 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.3e-74 274.2
Clacu08g1612 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.3e-74 274.2
Clacu11g1754 . 111 273 Primary Pumps ATPases(2) AT2G16510 99.4 4.3e-74 274.2
Clacu11g1754 . 109 230 Primary Pumps ATPases(2) AT1G19910 99.2 5.4e-53 203.8
Clacu08g1611 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Clacu08g1612 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Clacu05g1865 . 4 180 Primary Pumps ATPases(2) AT2G25610 82.5 2.4e-70 262.3
Clacu08g1455 . 4 180 Primary Pumps ATPases(2) AT2G25610 84.2 3.1e-70 261.9
Clacu08g1611 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 3.9e-60 227.6
Clacu08g1612 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 3.9e-60 227.6
Clacu11g1754 . 136 273 Primary Pumps ATPases(2) AT4G38920 99.3 3.9e-60 227.6
Clacu05g1865 . 11 180 Primary Pumps ATPases(2) AT4G32530 77.5 6.1e-73 270.8
Clacu08g1455 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.3 1.5e-71 266.2
Clacu03g0182 . 1 1065 Primary Pumps ATPases(2) AT1G07810 80.6 0.0e+00 1672.1
Clacu03g0182 . 1 1065 Primary Pumps ATPases(2) AT1G07670 80.3 0.0e+00 1671.8
Clacu08g1822 . 193 1190 Primary Pumps ATPases(2) AT1G10130 83.2 0.0e+00 1628.2
Clacu03g0182 . 22 1046 Primary Pumps ATPases(2) AT4G00900 65.7 0.0e+00 1320.8
Clacu03g1772 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.1 3.8e-57 217.6
Clacu02g0417 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.1 4.5e-268 920.2
Clacu10g2006 . 62 169 Primary Pumps ATPases(2) AT3G01390 80.6 3.7e-37 151.0
Clacu01g0815 . 241 616 Primary Pumps ATPases(2) AT1G12840 83.2 1.2e-180 629.4
Clacu09g2243 . 1021 1281 Primary Pumps ATPases(2) AT3G58730 82.4 7.8e-118 420.2
Clacu10g1624 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.4 2.0e-206 715.3
Clacu08g1611 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.3e-74 274.2
Clacu08g1612 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.3e-74 274.2
Clacu11g1754 . 111 273 Primary Pumps ATPases(2) AT2G16510 99.4 4.3e-74 274.2
Clacu02g0417 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.9 2.8e-270 927.5
Clacu05g1557 . 1 182 Primary Pumps ATPases(2) AT1G64200 73.0 1.6e-64 242.7
Clacu02g0417 . 9 488 Primary Pumps ATPases(2) AT1G20260 95.8 9.3e-266 912.5
Clacu02g2138 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.8 0.0e+00 1347.0
Clacu08g1622 . 1 802 Primary Pumps ATPases(2) AT2G28520 63.2 4.1e-298 1020.8
Clacu02g0509 . 10 813 Primary Pumps ATPases(2) AT2G28520 62.8 1.1e-292 1002.7
Clacu10g1482 . 120 461 Primary Pumps ATPases(2) AT3G28715 92.7 2.7e-187 651.4
Clacu05g1557 . 1 229 Primary Pumps ATPases(2) AT4G11150 77.0 2.7e-90 328.6
Clacu09g0169 . 1 623 Primary Pumps ATPases(2) AT1G78900 93.3 0.0e+00 1171.4
Clacu02g0417 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.1 4.5e-268 920.2
Clacu02g0417 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.9 2.8e-270 927.5
Clacu02g0417 . 9 488 Primary Pumps ATPases(2) AT1G20260 95.8 9.3e-266 912.5
Clacu01g0815 . 241 616 Primary Pumps ATPases(2) AT1G12840 83.2 1.2e-180 629.4
Clacu09g2243 . 1021 1281 Primary Pumps ATPases(2) AT3G58730 82.4 7.8e-118 420.2
Clacu05g1557 . 1 229 Primary Pumps ATPases(2) AT4G11150 77.0 2.7e-90 328.6
Clacu05g1557 . 1 223 Primary Pumps ATPases(2) AT3G08560 68.6 8.7e-76 280.4
Clacu05g1557 . 1 182 Primary Pumps ATPases(2) AT1G64200 73.0 1.6e-64 242.7
Clacu03g1772 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.1 3.8e-57 217.6
Clacu10g2006 . 62 169 Primary Pumps ATPases(2) AT3G01390 80.6 3.7e-37 151.0
Clacu10g1624 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.4 2.0e-206 715.3
Clacu02g2138 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.8 0.0e+00 1347.0
Clacu08g1622 . 1 802 Primary Pumps ATPases(2) AT2G28520 63.2 4.1e-298 1020.8
Clacu02g0509 . 10 813 Primary Pumps ATPases(2) AT2G28520 62.8 1.1e-292 1002.7
Clacu02g0509 . 6 818 Primary Pumps ATPases(2) AT2G21410 75.7 0.0e+00 1233.8
Clacu08g1622 . 1 807 Primary Pumps ATPases(2) AT2G21410 73.5 0.0e+00 1195.3
Clacu02g2138 . 9 818 Primary Pumps ATPases(2) AT2G21410 62.5 8.2e-299 1023.1
Clacu02g0509 . 8 818 Primary Pumps ATPases(2) AT4G39080 76.9 0.0e+00 1235.7
Clacu08g1622 . 1 807 Primary Pumps ATPases(2) AT4G39080 74.2 0.0e+00 1192.6
Clacu02g2138 . 9 818 Primary Pumps ATPases(2) AT4G39080 63.4 9.1e-298 1019.6
Clacu08g1611 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Clacu08g1612 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Clacu11g1754 . 136 273 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Clacu11g1754 . 109 230 Primary Pumps ATPases(2) AT1G19910 99.2 5.4e-53 203.8
Clacu08g1611 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Clacu08g1612 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Clacu08g1611 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 3.9e-60 227.6
Clacu08g1612 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 3.9e-60 227.6
Clacu11g1754 . 136 273 Primary Pumps ATPases(2) AT4G38920 99.3 3.9e-60 227.6
Clacu08g1611 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.4e-66 249.6
Clacu08g1612 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.4e-66 249.6
Clacu11g1754 . 110 273 Primary Pumps ATPases(2) AT1G75630 80.3 3.1e-66 248.4
Clacu08g1611 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.3e-74 274.2
Clacu08g1612 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.3e-74 274.2
Clacu11g1754 . 111 273 Primary Pumps ATPases(2) AT2G16510 99.4 4.3e-74 274.2
Clacu05g1865 . 11 180 Primary Pumps ATPases(2) AT4G32530 77.5 6.1e-73 270.8
Clacu08g1455 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.3 1.5e-71 266.2
Clacu05g1865 . 4 180 Primary Pumps ATPases(2) AT2G25610 82.5 2.4e-70 262.3
Clacu08g1455 . 4 180 Primary Pumps ATPases(2) AT2G25610 84.2 3.1e-70 261.9
Clacu10g1482 . 120 461 Primary Pumps ATPases(2) AT3G28710 95.0 2.4e-194 674.9
Clacu10g1482 . 120 461 Primary Pumps ATPases(2) AT3G28715 92.7 2.7e-187 651.4
Clacu03g0182 . 1 1065 Primary Pumps ATPases(2) AT1G07810 80.6 0.0e+00 1672.1
Clacu03g0182 . 22 1046 Primary Pumps ATPases(2) AT4G00900 65.7 0.0e+00 1320.8
Clacu08g1822 . 193 1190 Primary Pumps ATPases(2) AT1G10130 83.2 0.0e+00 1628.2
Clacu03g0182 . 1 1065 Primary Pumps ATPases(2) AT1G07670 80.3 0.0e+00 1671.8
       

Syn-Orthogroups


Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006487 2 1 2 1 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 0 1 1 1 1 1 1 1 2 37