Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g0177 ATGTGGAGGCTTAAGGTAGCAGATGGCGGGAATGATCCTTACATCTATTCTATGAACAACTTTGTAGGAAGGCAAATATGGGAATTCGACCCCAACGCAGGGACCCCTGAAGAGCTGGCCGAAGTCGAACGCGTTCGCGATGAGTTCACCAAAAATCGTCTCAAAGGTTTTCCAAGTGCTGACTTGCTTTGGCGCCTCCAGCTTCTGAGAGAGAAGAATTTCAAACAAAGCATCCCACGGGTGAAGGTTGAAGAAGGAGAAGAAATGAGTTACGAAATGGCATGGGATGCAATGAGAAGAGGGGCGCATTTCTTAGCGGCCATACAAGCAAGCGATGGGCATTGGCCCAGCGAAACATCGGGCCCACTATTTTACTTGTGTCCCCTCCTTATTTGCATGTACATAATGGGCTTTATGGATACCGCATTCACTCCCGAGCACAAGAAAGAAATGATGCGTTACGTTTACAACCATCAGAATGAAGATGGTGGATGGGGGTTACACGTTGGTGGTCACAGTAATATGTTCTGCACTACCTTCAATTATATCTCTTTACGTTTACTTGGTGAAGGACCTGATGTTGAGCTAGTTTCCAGAGCCAGAGAATGGATTCGTGATCACGGCGGTGTCACATCCATACTTTCTTGGGGAAAGACGTGGCTCTCAATATTAAACGTGTTCGACTGGTCTGCAAGCAACCCCATGCCTCCTGAATATTGGATGTTTCCCACTTGGGTTCCCATTCATCCATCAAACATGATGTGCTACACTCGGATCACCTACATGCCCATGTCTTACCTATATGGAAAAAGGTTCCAAGCACCTCTAACGCCTCTTGTTTTACAATTAAGAGATGAACTTCACACTCAACCCTACGACCAAATTAATTGGAGAAAAGTTCGTCACATGTGTGCTACGGAAGACCTCTACTTTCCACATCCCATTGTCCAAGACTTGCTTTGGGACACTCTTTACTTGCTAAGTGAACCACTCATGACCCGGTGGCCTTTTAACAAATTGATTCGCCAAAAAGCCCTCAATGAGACTATGAGGCATATTCATTATGAGGATGAAAATAGTCGCTACATCACTATTGGTTGCGTCGAAAAGCCATTATGCATGCTAGCTTGTTGGGTTGAAGATCCTAATAGTGAGTACGTGAAGAAGCATTTTGCGAGAATTCCTGATTATTTATGGATGGCGGAAGATGGCATGAAAATGCAAAGTTTTGGTAGCCAATCGTGGGATGCCGCTTTGGCAATGCAAGCGCTGCTTTCTTGTAATATCCCACATGAAATTGGGCCTGCTCTCAACACTGGCCATCAATTCATCAAGAACTCCCAGGTTAGAAACAATCCTCCTGGTGACTACAAAAGTATGTTCCGCTACATGTCTAAAGGATCTTGGACCTTCTCAGACTGTGATCATGGATGGCAAGTTTCTGATTGCACTGCCGAGAATTTGAAGTGTTGTCTACTGCTGTCGTTGCTACCACCTGAAATGGTTGGTGAGAAGATGGAACCTGAACGTTTTTACGATGCTGTTAATGTCATTCTGAACATGCAAAGCAAAAATGGGGGTTTACCAGCCTGGGAGCCAGCGTCAAGTTACTACTGGATGGAGTGGCTGAATCCAGTGGAATTTCTCGAAGATCTAATCATCGAGCACCAGCATGTGGAGTGCACCTCATCTGCGTTGCAAGCAATACTCTTATTTAGGAAACAATACCCAGGACATAGAAGGAAAGAGATCAACAATTTTATCAACAAGGCCGTTCAATTTCTTCAAGATATACAATTGCCTGATGGATCTTGGTATGGGAACTGGGGAATTTGCTATACTTATGGAACGTGGTTCGCACTCAAGGCATTGTCAATGGCGGGGAAGACCTATGAAAATTGTGAGGCGCTTCGGAAAGGAGCTAATTTTCTAATCAAGATACAGAATCCAGAAGGAGGGTTTGGAGAGAGCTACTTGTCATGTCCTTACAAGAGATATATACCGCTGGATGGGAAAAGATCAAATTTGGTGCAAACGGCATGGGGTATGATGGGTTTGATAAGTGCTGGACAGGCAGATGTAGACCCCACTCCTATTCATCGTGCTGCCAAGTTGTTGATCAATTCTCAAACAGAAGATGGTGATTTTCCACAAGAGGAAATTACGGGAGAATTCTTCAAAAATTGTACTTTACATTTTGCAGCATTTAGAGAAGTATTTCCTGTGATGGCACTGGGAGAATATTGTAATAAGGACCCCGCTCGATGCTCATTCTCATCGTTGACCAGACCCCGGAGAGTGGCACAGTGGTTTGGAATTGGATCAGCCCAAACGCTCTCTATACATTCCAATTACAGTAGTTTGTTCGAGTTTCACAAGGCCAATCACCCCTTGAAGAAAGCGCAACGAGTAGAAGAGGAAGAAGAAGGACGAAAACTAGAGCCCCAACCCTCTCTCTCAACTTCTCAGAGTTGCAGTAGTCCAAGGTGCATCATTAGTCCATCAGCATTTTTCCCAACTCCATGCTGGAGAACCTTAAATGCTGTTCAACTTAACCCGTCTCATCTCATTATGCACCGGCTTTTGTTTCGGGATTCAATTCTCGTCTCAAAGTTATCGGCTTTACGAGTCAGACCAGGCTTTAGAATTACGTGTTCTATAAACCGCTTTTCCATCATTTTCTGCCTTATTCCAGTTTCCGCGAACTCTGTTTTGTTTTTGGTTTTTTCTTCCTTTGCTTGGGAAATTTCTATTCGTCCATTCCATCCACTTGACCGCCCCCATATTTTCATATTTCGTTTTCATTTGTATCAGTCAGGAATTTCCAAAATTCAGCGACCAGGGTCGGGGGGCGATTTGCCCCAGGGTGGCGAGTACAACCCTTATCCTATTGCGCGGAGGGTAAATTCCTCCCATACCGTTCTCATGGATGATGACATTGAAAATGCTAGCTTGGGGGTGTACCAAGACAGGCAAAGGACTTTCCCCGATATGCGTAGTAAAGTCAACACCACATTGATATTTCGAATTATGATGGGGATAAATATTCGTGTTCTCTTAGTACTTCTTCTCTTTGCATTTGGAATAATATTCTACATTGGAGCAAGCACTTCCCCAATTATTGTGTTTGTCTTCTCAATTTGCATCGTCAGCTTCTGCTTTTCGATATATCTCACCAAATGGGTGCTCTCGAAAGATGAAGGGCCACGGGAGATGGCTCAGATTTCAGAGGCAATACGTGATGGGGCAGAAGGTTTCTTTAGGACTCAGTATAGTACCATCTCCAAAATGGCTATGTTACTTGCAGTAGTGATTCTTTGCATATACTTGTTTCGTAGTACTACTCCTCAACAAGAATCTTCCGGAATAGGGAGGTCAACAACTGCTTATATTACTGTTGCAGCATTTCTGTTAGGAGCCTTGTGTTCAGGTATTGCAGGGTATGTTGGAATGTGGGTTTCAGTTCGTGCAAATGTCAGGGTCTCTAGTGCTGCCAGACGGTCTGCAAGGGAGGCATTGCAGATTGCTGTCCGGGCTGGTGGTTTTTCTGCCATAGTTGTTGTTGGCATGGCTGTTATTGGTATAGCCATCCTGTATGCTGCATTTCATGTTTGGTTGGATGTGGGTTTGCCAGGTTCAACCAAGGTTACTGACTTGCCTCTTCTCCTTGTGGGTTATGGTTTTGGAGCTTCTTTTGTTGCCCTATTTGCTCAGTTGGGTGGTGGTATCTATACCAAAGCTGCTGATGTTGGGGCAGACCTTGTCGGAAAAGTTGAGCAGGGAATACCAGAAGATGACCCAAGAAATCCTGCTGTTATTGCAGATCTGGTTGGGGACAATGTGGGCGATTGTGCCGCTCGAGGTGCAGATCTCTTTGAAAGCATAGCTGCTGAAATTATTAGTGCCATGATACTTGGGGGGACAATGGCTGAACGTTGTAAAATTGAAGATCCATCTGGTTTCATTTTATTTCCGCTGGTAGTACACTCCTTTGATCTGGTGATTTCATCAATTGGCATTCTCTCTATCAGGAGAGGTAATCGTGAATCTGGTGTTAAGGGTCCCATAGAGGATCCAATGACTATTCTGCAGAGAGGATACTCTGTCACTATCGTTCTAGCTGTTCTAACATTTGGCGTGTCTACCCGGTGGTTGCTTCATACTGAACAAGCACCTTCTGCATGGTTCAACTTTGCCTTGTGTGGCTTGGTTGGTATTATAACGGCTTACATTTTTGTCTGGATCACAAAATACTACACTGACTACAAGCATGAGCCCGTGCGTTCATTAGCACTTTCTAGCTCCACAGGCCATGGGACAAACATAATTGCTGGAGTCAGTTTGGGCCTAGAATCAACAGCACTTCCTGTTCTTGTTATTAGTGTTTCTATTGTTTCAGCTTTCTGGTTGGGTCGCACATCAGGACTCGTGGACGAAGCGGGAAATCCAACAGGTGGACTATTTGGTACTGCTGTAGCAACAATGGGAATGCTCAGCACTGCTGCCTATGTTCTCACAATGGATATGTTTGGGCCAATAGCTGATAATGCTGGTGGAATTGTTGAGATGAGTCAGCAGCCAGAAAGCGTTCGGGAGATTACTGATCTTCTTGATGCAGTAGGTAACACAACTAAAGCGACCACAAAAGGTTTTGCCATTGGCTCTGCAGCACTGGCATCCTTCTTACTTTTCAGTGCGTATATGGATGAGGTATCTGCATTTGCTCATGAACCTTTTAAACAGGTAGATATTGCAATTCCAGAAGTTTTCGTTGGTGGTTTGTTGGGTTCCATGCTTATTTTTCTCTTTAGTGCTTGGGCCTGCTCTGCTGTTGGCCGAACAGCCCAAGAGGTTGTAAAGGAAGTAAGAAGACAGTTCATTGAGAGGCCTGGTATTATGGATTATACCGAGAAACCAGAATATGGACGTTGCGTTGCTATTGTAGCATCAGCATCTTTAAGGGAGATGATTAAACCTGGTGCTTTGGCTATCATTTCTCCTATGGCAGTTGGCTTCCTGTTTAGAATATTGGGACACTACACTGGGCAGCCGCTTTTAGGGGCCAAGGTCGTTGCTGCGATGCTGATGTTTGCCACAGTCTCCGGTATTCTCATGGCACTTTTTCTGAACACAGCAGGGGGTGCCTGGGATAATGCCAAGAAGTATATAGAGACTGGGGTTCTTGGAGGTAAAGGTAGCGATTGTCATAAAGCTGCCGTAACTGGGGACACTGTAGGTGACCCATTCAAGGACACAGCAGGGCCTTCTCTTCACGTTCTCATTAAAATGCTCGCAACCATAACGCTGGTCATGGCTCCGATCTTTCTCTAA 5331 44.83 MWRLKVADGGNDPYIYSMNNFVGRQIWEFDPNAGTPEELAEVERVRDEFTKNRLKGFPSADLLWRLQLLREKNFKQSIPRVKVEEGEEMSYEMAWDAMRRGAHFLAAIQASDGHWPSETSGPLFYLCPLLICMYIMGFMDTAFTPEHKKEMMRYVYNHQNEDGGWGLHVGGHSNMFCTTFNYISLRLLGEGPDVELVSRAREWIRDHGGVTSILSWGKTWLSILNVFDWSASNPMPPEYWMFPTWVPIHPSNMMCYTRITYMPMSYLYGKRFQAPLTPLVLQLRDELHTQPYDQINWRKVRHMCATEDLYFPHPIVQDLLWDTLYLLSEPLMTRWPFNKLIRQKALNETMRHIHYEDENSRYITIGCVEKPLCMLACWVEDPNSEYVKKHFARIPDYLWMAEDGMKMQSFGSQSWDAALAMQALLSCNIPHEIGPALNTGHQFIKNSQVRNNPPGDYKSMFRYMSKGSWTFSDCDHGWQVSDCTAENLKCCLLLSLLPPEMVGEKMEPERFYDAVNVILNMQSKNGGLPAWEPASSYYWMEWLNPVEFLEDLIIEHQHVECTSSALQAILLFRKQYPGHRRKEINNFINKAVQFLQDIQLPDGSWYGNWGICYTYGTWFALKALSMAGKTYENCEALRKGANFLIKIQNPEGGFGESYLSCPYKRYIPLDGKRSNLVQTAWGMMGLISAGQADVDPTPIHRAAKLLINSQTEDGDFPQEEITGEFFKNCTLHFAAFREVFPVMALGEYCNKDPARCSFSSLTRPRRVAQWFGIGSAQTLSIHSNYSSLFEFHKANHPLKKAQRVEEEEEGRKLEPQPSLSTSQSCSSPRCIISPSAFFPTPCWRTLNAVQLNPSHLIMHRLLFRDSILVSKLSALRVRPGFRITCSINRFSIIFCLIPVSANSVLFLVFSSFAWEISIRPFHPLDRPHIFIFRFHLYQSGISKIQRPGSGGDLPQGGEYNPYPIARRVNSSHTVLMDDDIENASLGVYQDRQRTFPDMRSKVNTTLIFRIMMGINIRVLLVLLLFAFGIIFYIGASTSPIIVFVFSICIVSFCFSIYLTKWVLSKDEGPREMAQISEAIRDGAEGFFRTQYSTISKMAMLLAVVILCIYLFRSTTPQQESSGIGRSTTAYITVAAFLLGALCSGIAGYVGMWVSVRANVRVSSAARRSAREALQIAVRAGGFSAIVVVGMAVIGIAILYAAFHVWLDVGLPGSTKVTDLPLLLVGYGFGASFVALFAQLGGGIYTKAADVGADLVGKVEQGIPEDDPRNPAVIADLVGDNVGDCAARGADLFESIAAEIISAMILGGTMAERCKIEDPSGFILFPLVVHSFDLVISSIGILSIRRGNRESGVKGPIEDPMTILQRGYSVTIVLAVLTFGVSTRWLLHTEQAPSAWFNFALCGLVGIITAYIFVWITKYYTDYKHEPVRSLALSSSTGHGTNIIAGVSLGLESTALPVLVISVSIVSAFWLGRTSGLVDEAGNPTGGLFGTAVATMGMLSTAAYVLTMDMFGPIADNAGGIVEMSQQPESVREITDLLDAVGNTTKATTKGFAIGSAALASFLLFSAYMDEVSAFAHEPFKQVDIAIPEVFVGGLLGSMLIFLFSAWACSAVGRTAQEVVKEVRRQFIERPGIMDYTEKPEYGRCVAIVASASLREMIKPGALAIISPMAVGFLFRILGHYTGQPLLGAKVVAAMLMFATVSGILMALFLNTAGGAWDNAKKYIETGVLGGKGSDCHKAAVTGDTVGDPFKDTAGPSLHVLIKMLATITLVMAPIFL 1776
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1689818 1710011 - ClG42_09g0017700.10 Clacu09g0177 256485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g0177 1776 NCBIfam V-type H(+)-translocating pyrophosphatase 1043 1775 IPR004131 GO:0004427(InterPro)|GO:0009678(InterPro)|GO:0016020(InterPro)|GO:1902600(InterPro)
Clacu09g0177 1776 Hamap Putative K(+)-stimulated pyrophosphate-energized sodium pump [hppA]. 1038 1776 IPR004131 GO:0004427(InterPro)|GO:0009678(InterPro)|GO:0016020(InterPro)|GO:1902600(InterPro)
Clacu09g0177 1776 Gene3D - 486 720 - -
Clacu09g0177 1776 NCBIfam squalene/oxidosqualene cyclases 97 749 IPR018333 GO:0005811(InterPro)|GO:0016104(InterPro)|GO:0016866(InterPro)
Clacu09g0177 1776 MobiDBLite consensus disorder prediction 800 827 - -
Clacu09g0177 1776 PANTHER TERPENE CYCLASE/MUTASE FAMILY MEMBER 1 751 IPR018333 GO:0005811(InterPro)|GO:0016104(PANTHER)|GO:0016104(InterPro)|GO:0016866(InterPro)|GO:0042300(PANTHER)
Clacu09g0177 1776 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 121 407 IPR008930 -
Clacu09g0177 1776 Pfam Inorganic H+ pyrophosphatase 1049 1771 IPR004131 GO:0004427(InterPro)|GO:0009678(InterPro)|GO:0016020(InterPro)|GO:1902600(InterPro)
Clacu09g0177 1776 ProSitePatterns Terpene synthases signature. 602 616 IPR002365 GO:0016866(InterPro)
Clacu09g0177 1776 Gene3D - 119 411 - -
Clacu09g0177 1776 CDD SQCY_1 98 748 IPR018333 GO:0005811(InterPro)|GO:0016104(InterPro)|GO:0016866(InterPro)
Clacu09g0177 1776 SFLD Prenyltransferase Like 2 94 750 IPR018333 GO:0005811(InterPro)|GO:0016104(InterPro)|GO:0016866(InterPro)
Clacu09g0177 1776 FunFam Terpene cyclase/mutase family member 386 755 - -
Clacu09g0177 1776 Pfam Squalene-hopene cyclase N-terminal domain 100 356 IPR032697 -
Clacu09g0177 1776 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 348 753 IPR008930 -
Clacu09g0177 1776 MobiDBLite consensus disorder prediction 800 814 - -
Clacu09g0177 1776 Pfam Squalene-hopene cyclase C-terminal domain 414 749 IPR032696 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1663 Clacu-Chr2:30015893 Clacu09g0177 Clacu-Chr9:1689818 0.00E+00 dispersed
Clacu06g1257 Clacu-Chr6:23534622 Clacu09g0177 Clacu-Chr9:1689818 1.00E-117 dispersed
Clacu06g1949 Clacu-Chr6:29682225 Clacu09g0177 Clacu-Chr9:1689818 0.00E+00 dispersed
Clacu09g0001 Clacu-Chr9:154735 Clacu09g0177 Clacu-Chr9:1689818 0.00E+00 dispersed
Clacu09g0177 Clacu-Chr9:1689818 Clacu09g2230 Clacu-Chr9:37086037 3.90E-269 dispersed
Clacu09g0177 Clacu-Chr9:1689818 Clacu09g0178 Clacu-Chr9:1721934 8.10E-251 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g0177 K23025 - ag:BAB68529 1514.59