Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g0184 ATGGCGTGGTTCACCATTGGAAGCTTTCAAGATTCCTTGAGCTTGCGCTCTTGCAAGGCTTATCTTGCTGAGTTCATCTCCACCTTACTCTTTGTTTTCGCCGGTGTCGGCTCCGCCATTGCCTACAATAAAATAACATCGTCAGCAGCTCTAGATCCAGCAGGGCTAGTTGCGGTGGCGGTTTGCCATGGATTTGCTCTGTTTGTTGCAGTCTCCATCGGAGCTAACATCTCCGGTGGCCACGTCAACCCGGCGGTGACGTTCGGGCTTCTTCTTGGAGACCAAATCAGCCTTATTACCACCATTTTTTACTGGATCGCTCAGCTTCTTGGCTCCATTGTCGCCTGCTACCTTCTCAAATATGTCACCGGCGGCCTTGCGGTTCCGGTCCACAGCGTTGCCGCCGGCGTAGGAGCGGCGGAAGGGGTTGTGACGGAGATTGTAACGACCTTCGGTTTGGTTTACACTGTCTATGCGACGGCGGCAGACCCAAAGAAGGGATCTTTGGGCACAATTGCGCCGATCGCCATCGGTTTCATCGTGGGAGCAAACATCTTGGCGGCCGGACCGTTTTCCGGCGGGTCGATGAACCCGGCTCGATCTTTCGGTCCGGCGGTGGTCAGTGGCGACTTTCATGATAACTGGATTTACTGGGTTGGGCCGCTCGTTGGCGGTGGCTTAGCTGGGCTTATCTACTTTTACGCCTTTATGGCCTATGGGCCCAGCCCAATTCCAAATGATTTCTAA 747 54.22 MAWFTIGSFQDSLSLRSCKAYLAEFISTLLFVFAGVGSAIAYNKITSSAALDPAGLVAVAVCHGFALFVAVSIGANISGGHVNPAVTFGLLLGDQISLITTIFYWIAQLLGSIVACYLLKYVTGGLAVPVHSVAAGVGAAEGVVTEIVTTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFHDNWIYWVGPLVGGGLAGLIYFYAFMAYGPSPIPNDF 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1767788 1769026 - ClG42_09g0018400.10 Clacu09g0184 256492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g0184 248 PANTHER AQUAPORIN-8 5 238 IPR034294 GO:0006833(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
Clacu09g0184 248 Pfam Major intrinsic protein 14 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu09g0184 248 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Clacu09g0184 248 NCBIfam MIP family channel protein 23 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu09g0184 248 CDD MIP 19 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu09g0184 248 SUPERFAMILY Aquaporin-like 15 242 IPR023271 -
Clacu09g0184 248 PRINTS Major intrinsic protein family signature 178 200 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu09g0184 248 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu09g0184 248 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu09g0184 248 PRINTS Major intrinsic protein family signature 145 163 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu09g0184 248 PRINTS Major intrinsic protein family signature 215 235 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu09g0184 248 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu09g0184 248 Gene3D Glycerol uptake facilitator protein. 2 240 IPR023271 -
Clacu09g0184 248 FunFam Probable aquaporin TIP1-1 2 247 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0424 Clacu-Chr1:4294662 Clacu09g0184 Clacu-Chr9:1767788 6.50E-98 dispersed
Clacu01g0504 Clacu-Chr1:4990527 Clacu09g0184 Clacu-Chr9:1767788 1.00E-48 dispersed
Clacu08g1383 Clacu-Chr8:23876761 Clacu09g0184 Clacu-Chr9:1767788 2.20E-66 dispersed
Clacu09g0184 Clacu-Chr9:1767788 Clacu10g1967 Clacu-Chr10:33205024 1.50E-70 dispersed
Clacu09g0184 Clacu-Chr9:1767788 Clacu04g0996 Clacu-Chr4:24122564 8.20E-77 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g0184 K09873 - csv:101218611 451.055