Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g0194 ATGGCCGTTGTCATGTCCGACGACCACCCCTCTCGCCGTCTTAAGATTCTTCCTTCTTCTCCGGCTCTCTCTCTCACTCTTGCTGGGGTTTTTGGGAATGCGGCGGCGATGGATGTGGAGTTCGACGCCCCGGCGAGGAGGGACGACAGCTACAGCGACAACTCTGAACCGGCGGGATCCAGGTCGGCGGAGGATTTGGGGGTCGACCCTGATGATGAAGATGAAGATAAATTACAGGGGAATACAAAGAAGAGGAAGAATCGTCATACTTTAGAGCAAATCAGAGAAATGGAAATGTTGTTTAAAGAATCACCTCATCCAGATGAGAAACAACGGCAACAACTCAGTGAGAAACTTGGTCTTTCTTGTAGGCAAATCAAGTTCTGGTTTCAGAATCGTAGAACTCAAATCAAGGCTATTCACGAGCGTCATGAAAACGCTTTATTGAAAGGAGAAATGGAGAAATTGCGAGAAGAAAACCAAGCTATGAGAGAAATGATCAGTAAATCTTCTTGCCCTAAATGTTGTTCTTCACCTAATTCCGTAGACCCAATTTTCACCAGCTCTGATCAACAACAACAACAACTAGTAACTGAAATTGCTCGACTAAAAGCTGAGGTGGAGAGATTACGAACAGCTCTGGATAAATACGTACCGGCGGGGACATCATCGGGGGAGAACAACGAGGAAGGAATAGAGAGGAGGAGAAATTTGGAGAAATCGAAGAGTATTTTGGGGATGGAGAAAGGTAGGGTTATGATGATAGGGAAGCGGGCGATTGAGGAGGTGGTGAAAATGGGGGATTCCGATGAGCCGCTGTGGGTCAGAAGCGTGGAAACAGGGAGAGAACTACTGAATTACGATGTGTATATGAAGGAATTGGCGGCCGGAAATGAGCGAGGGAAGAGAGAAGTGGAAGCGTCGAGAGAAACCGGCGTGGTGTTCGTGGATCTCCATCGATTGGTTCAGAGCTTCATGGATGTGGTTCAATGGAAGGAAATGTTTCCGTCGATAATCTCCAAGGCGTCGACAATGGAGGTCGTCTGCAATGGCGACGGGACCAACAAGGACGGCGCAGTTCAACTGATGTATGCAGAGCTCCAAATGTTGACCCCAATCCTCCCTCCAAGAGAGATCTTTTTCATTCGAAGTTGCAAGCAACTAAGCTCCGATAAATGGGTCGTCGCCGATGTCTCCATCGACAAAGTCGGAGACCATATCGACTCATCTTCCTCTCGTTGTAGGAAACGCCCATCTGGTTGCATCATCCAAGACACATCTGACGGTCATTGTAAGGTCACGTGGGTAGAGCACTGGGAATGCCACAAGATTGGACTTCACACCATATATCGAACCATTGTCAACAGTGGGTTGATATTCGGGGCGAGGCATTGGAAGGCCACGTTACAAAGCCATTGTGAGTGGCAGGTTTTCTTCATGGCTACCAACGTTCCCATGAAGGATTCCACTGGAATCACCACTGTTGGTGGGAGAAAAAGTGTTCTTCGATTGGCTCAGAGAATGGCCTCTAGTATTTATCAAGCCATTGGTGCTTCAAGCAGCCATACATGGACCAAGATCCAGAGCAAAATAGGTGAAACCATACGTATTGCTTCTAGGAAGAACTTGAAAAACCCACAAGAACCTACTGGTTTGATCTTGTGTGCTGTTGCTTCTGTTTGGCTACCTGTTTCCCCTAAACTCTTGTTCGAATTCTTGATCGATGAATCTCGCCGACCCGAGTGGGATGTAATGCTAAGTGGTGGTCAAGCTGAAATGTTAGCAAACTTTGCCAAAGGACAGAATCGAGGCAATGCCGTAACTATCCAAGCAATAAAATCAGACGAAACCAACACGTGGATTCTACAAGATAGTCTAACGAATGAATACGAATCAACGGTCGTCTATGCTCAAGTTGACATGAATAGCATGAAATCTGTGATGGCCGGGTTCGACCCGAGCAATATCACGACGTTACCGACAGGCTTCTCGATCCTTCCAGATGGACACCCCACAAGGCCATTGGTTATCAGTTCTAGCAAAGAGGAGAGGGAGACAGAAGGAGGCTCATTGCTAACAATAGCATCTCAAATCCTTGTTAGTCCCTCCCCAACAGCCGAAACGACGTCGCAGTCAGTTGATTATGTTAACAATATTATATCACATACATTAGAAAATATTAAAGCAAGCCTAAAAGGTGAGGATGATTGA 2211 46.68 MAVVMSDDHPSRRLKILPSSPALSLTLAGVFGNAAAMDVEFDAPARRDDSYSDNSEPAGSRSAEDLGVDPDDEDEDKLQGNTKKRKNRHTLEQIREMEMLFKESPHPDEKQRQQLSEKLGLSCRQIKFWFQNRRTQIKAIHERHENALLKGEMEKLREENQAMREMISKSSCPKCCSSPNSVDPIFTSSDQQQQQLVTEIARLKAEVERLRTALDKYVPAGTSSGENNEEGIERRRNLEKSKSILGMEKGRVMMIGKRAIEEVVKMGDSDEPLWVRSVETGRELLNYDVYMKELAAGNERGKREVEASRETGVVFVDLHRLVQSFMDVVQWKEMFPSIISKASTMEVVCNGDGTNKDGAVQLMYAELQMLTPILPPREIFFIRSCKQLSSDKWVVADVSIDKVGDHIDSSSSRCRKRPSGCIIQDTSDGHCKVTWVEHWECHKIGLHTIYRTIVNSGLIFGARHWKATLQSHCEWQVFFMATNVPMKDSTGITTVGGRKSVLRLAQRMASSIYQAIGASSSHTWTKIQSKIGETIRIASRKNLKNPQEPTGLILCAVASVWLPVSPKLLFEFLIDESRRPEWDVMLSGGQAEMLANFAKGQNRGNAVTIQAIKSDETNTWILQDSLTNEYESTVVYAQVDMNSMKSVMAGFDPSNITTLPTGFSILPDGHPTRPLVISSSKEERETEGGSLLTIASQILVSPSPTAETTSQSVDYVNNIISHTLENIKASLKGEDD 736
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1859602 1867044 + ClG42_09g0019400.10 Clacu09g0194 256502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g0194 736 SUPERFAMILY Bet v1-like 518 722 - -
Clacu09g0194 736 SMART START_1 254 475 IPR002913 GO:0008289(InterPro)
Clacu09g0194 736 MobiDBLite consensus disorder prediction 45 92 - -
Clacu09g0194 736 ProSiteProfiles 'Homeobox' domain profile. 80 140 IPR001356 GO:0003677(InterPro)
Clacu09g0194 736 Gene3D - 70 151 - -
Clacu09g0194 736 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 73 732 IPR042160 -
Clacu09g0194 736 CDD homeodomain 83 138 IPR001356 GO:0003677(InterPro)
Clacu09g0194 736 SUPERFAMILY Homeodomain-like 72 139 IPR009057 -
Clacu09g0194 736 MobiDBLite consensus disorder prediction 218 240 - -
Clacu09g0194 736 ProSitePatterns 'Homeobox' domain signature. 115 138 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Clacu09g0194 736 FunFam Homeobox-leucine zipper protein GLABRA 2 254 474 - -
Clacu09g0194 736 SMART HOX_1 82 144 IPR001356 GO:0003677(InterPro)
Clacu09g0194 736 Coils Coil 193 213 - -
Clacu09g0194 736 Pfam START domain 258 474 IPR002913 GO:0008289(InterPro)
Clacu09g0194 736 FunFam Homeobox-leucine zipper protein HDG1 69 156 - -
Clacu09g0194 736 Gene3D - 253 474 IPR023393 -
Clacu09g0194 736 MobiDBLite consensus disorder prediction 76 92 - -
Clacu09g0194 736 Coils Coil 139 166 - -
Clacu09g0194 736 ProSiteProfiles START domain profile. 245 478 IPR002913 GO:0008289(InterPro)
Clacu09g0194 736 CDD START_ArGLABRA2_like 249 474 - -
Clacu09g0194 736 Pfam Homeodomain 83 138 IPR001356 GO:0003677(InterPro)
Clacu09g0194 736 SUPERFAMILY Bet v1-like 248 474 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu09g0194 Clacu-Chr9:1859602 Clacu09g1169 Clacu-Chr9:11397695 6.80E-111 dispersed
Clacu07g1314 Clacu-Chr7:27934672 Clacu09g0194 Clacu-Chr9:1859602 4.30E-209 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48271 PF01852 START 1.50E-51 CL0209 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g0194 K09338 - csv:101218545 1300.8