Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g0209 ATGGATTTCTGGCCAGAATTCCTTGCAAGCAGTTGGGGTAGAGAATTTGTCGCTGGTGGATTTGGTGGCATCGCCGGCATAATCTCCGGCTACCCACTTGATACTCTTCGAGTAAGGCAACAGCAATCCATTTCTGGTTCTGCTTTGAAAATCTTTCGCAATATCATTGCCAACGATGGCGTTGCTGGTCTTTACAGAGGCATGGCTGCTCCTTTGGCCTCTGTCACTTTCCAGAACGCCGCCGTGTTTCAGATCTACGCCGTTCTTTCTCGGGCATTCAACTCCTCCTCCCAATCCAATGGTGACCCTCCAAGCTATAAGGCCGTGGCCTTTGGAGGATTTGGCACCGGAGCTCTTCAGAGCTTCATCTTGTCGCCGGTAGAGCTTGTGAAGATCCGCCTGCAATTGCAGAGTTCAAGCCATGCAGCAGCATCACACCAACAATTAATTTCTTCTTCCCATAGAGGTCCATTGAGCGTCGCCAAAAGCATCTGCAAAACAGAAGGATTGAGAGGAATTTACAGAGGACTTACCATAACCATGCTGAGAGATGCACCTGCACACGGCATCTATTTCTGGACATATGAGTGCATGAGAGAGCAGTTTCATCCTGGCTGCCGGAAGACCGGCCAAGAGAGCGTCGGCACAATGCTGGTCGCCGGAGGGCTTGCCGGAGTTGCTAGCTGGGTTTTTTGTTATCCCTTGGATGTATTGAAGACTAGAATTCAGGGTCAGACACAAAGTTCACCTCGAAAGTACAATGGAATTGTGGATTGTCTTAGCAAAAGTGTGAGAGAAGAGGGTTACAGAGTGCTATGGCGAGGGCTCGGGACAGCAGTTGCCAGAGCATTTGTGGTAAATGGGGCCATTTTTGCTGCTTATGAGATAACATTGAGGTGTTTGTTTAGCAATGGAAGCAATCAGACACAACAATAA 936 48.82 MDFWPEFLASSWGREFVAGGFGGIAGIISGYPLDTLRVRQQQSISGSALKIFRNIIANDGVAGLYRGMAAPLASVTFQNAAVFQIYAVLSRAFNSSSQSNGDPPSYKAVAFGGFGTGALQSFILSPVELVKIRLQLQSSSHAAASHQQLISSSHRGPLSVAKSICKTEGLRGIYRGLTITMLRDAPAHGIYFWTYECMREQFHPGCRKTGQESVGTMLVAGGLAGVASWVFCYPLDVLKTRIQGQTQSSPRKYNGIVDCLSKSVREEGYRVLWRGLGTAVARAFVVNGAIFAAYEITLRCLFSNGSNQTQQ 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1931961 1933003 - ClG42_09g0020900.10 Clacu09g0209 256517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g0209 311 SUPERFAMILY Mitochondrial carrier 12 295 IPR023395 -
Clacu09g0209 311 PRINTS Mitochondrial carrier protein signature 221 243 IPR002067 GO:0055085(InterPro)
Clacu09g0209 311 PRINTS Mitochondrial carrier protein signature 174 192 IPR002067 GO:0055085(InterPro)
Clacu09g0209 311 PRINTS Mitochondrial carrier protein signature 119 137 IPR002067 GO:0055085(InterPro)
Clacu09g0209 311 PRINTS Mitochondrial carrier protein signature 15 28 IPR002067 GO:0055085(InterPro)
Clacu09g0209 311 Gene3D Mitochondrial carrier domain 105 310 IPR023395 -
Clacu09g0209 311 ProSiteProfiles Solute carrier (Solcar) repeat profile. 212 300 IPR018108 -
Clacu09g0209 311 Pfam Mitochondrial carrier protein 11 95 IPR018108 -
Clacu09g0209 311 Pfam Mitochondrial carrier protein 212 302 IPR018108 -
Clacu09g0209 311 Pfam Mitochondrial carrier protein 110 202 IPR018108 -
Clacu09g0209 311 Gene3D Mitochondrial carrier domain 4 101 IPR023395 -
Clacu09g0209 311 ProSiteProfiles Solute carrier (Solcar) repeat profile. 104 201 IPR018108 -
Clacu09g0209 311 ProSiteProfiles Solute carrier (Solcar) repeat profile. 13 92 IPR018108 -
Clacu09g0209 311 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 8 301 IPR050567 GO:0006810(PANTHER)|GO:0022857(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu09g0209 Clacu-Chr9:1931961 Clacu10g2190 Clacu-Chr10:35013085 7.30E-22 dispersed
Clacu07g1308 Clacu-Chr7:27906342 Clacu09g0209 Clacu-Chr9:1931961 6.30E-127 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g0209 K15109 - csv:101222165 545.814