Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g0211 ATGGCGATTGGGAATGGAACTACCACACGAATTCTTCCATTTTCCTGCTTTCTATACTGCTATTATTGCTTTATATTAGTGTTCTTTTTGGTGGAGTTTTCCCATGGCCAGTCTACACAAACCAATAATGTTCTTACACAAGGCCAAAAGCTATCAATTGGGTCTCAATTAATTTCATCCACCGCCAACTTTATGCTAGGATTTTACAATCCTTACAATTCTAATACCACTTATTTAGGAATCTCCTACAACACTAATCACCAGAAGCCAATCTGGATAGCCAATCCAAACTCCCCATTTCCCAGCAATTCCACTCCCATCAGCCTCACCATCGACGCCAACGGCAGCTTCAAAATTCAAAATGGCCATTATTCCTTTTCACTCTTCGATGTCGGGCAACCAACCACCAGCAGCGCCATATTGCAAGACGACGGCAACTTTGTACTACGAGAGCTGAACAGAGATGGATCGGTTAAGCAAATTCTGTGGCAGAGCTTTGATCATCCAACAGATACTCTGCTTCCCGGAATGAAAATTGGGATCAATCACAAAACAAACTCCACTTGGTCATTAACATCATGGAGAACCATTGAATCTCCCATGGCAGGAGCATTCACTCTGGCAATGAATCCAAACAATACATATCAATTACTGATATTTTTCAGAGGTGCTCTGTTTTGGAGCAGCGGGAATTGGAAAGACGGTTCGTTCGAATTCTTACAATATCTGTCGAATTCCGACCCTTACAACAGCAATCAAAACCAAGAAATGTATATCAATCGAATTTCGAATGAGAATGAAACGTTTTTCATTTACTACATTCCGAAATTCGATCGATCTCCCACTCCTTACGCGTATCGAAATCTATATTACCCAAAATCAGGGGAATTTGTACTACCCCAATTGAGATTAGAAGATGGTGGGAATTTGGGGATTAACGATCAGAGTTCGTACTCTGTTTGCTCCCTGTTTGAAAACGAGGATGGAGGGTGTGTGTGGAAAGAACAGCAGAAAATTCCGGAGTGCAGGAATTGGCTGTATGGGTTTAGCGAGCCATTTAGCCCGAGGTTTGGTTACATGGAGGAGGGAATTAATGGTTCTAATTACAACAAACAAAGTGGGAACTTAACCATGTTTGAATGTGAAACTATTTGCATTTTTGATTGTGATTGCATAGCTATTGGATTTAGCGATGAAGAAGATGGCACCAGCTGTGAGATTTGGAAATCAGGAGCCACGTTTAATTCAGTCTCCGCCGGTTCACGAGAGTATTTCTTTCTGGACCACACGACCCAGACCGGCCAAGTTACGGGGAAAATGAAGAGAAGGTTTGTTTGCGTGATGGGGTTCATATCCGAAGGTTTTAATATTTTAGGAATAATGATAAGACAAATAAGAGATGGGAAAAAGAATCCTGAATTGCAAATTTTTGACTTTGAAACCATTGTTTCTGCCACAAATAATTTTGGAGATGAATGTAAGCTTGGACAAGGTGGTTTTGGACCTGTTTATAAGGGAATTTTGACGGATGGCCAAGAAGTAGCCATTAAAAGATTGTCTAAGAATTCAGGACAAGGATTGGTGGAGTTCAAGAATGAAACTATTTTGATTGCTAAACTTCAACACACAAATTTGGTTAGGCTTATTGGTTGCTGCATTTATAAAGAAGAGAAATTGTTGGTGTATGAGTACATGCCCAACAAAAGCCTTGACTTCTTCCTCTTTGACTCCGAGAAGAAGTTAGCATTAAATTGGGAGAAACGTTTGCACATCATTCAAGGGATCGTTCAAGGACTACTCTACCTTCACTACTACTCAAGGGTACGAATAATTCATCGAGATTTAAAAGTCAGCAATATCTTACTCGATGATGAGATGAATGCAAAAATATCAGATTTTGGTATGGCTAGAGTGTTTAAGCCATCAGAGCATGAAGCAAATACAAGTCGAGTGGTTGGTACATATGGCTATATATCACCAGAATATGCAATGGAGGGCATTTTTTCAATAAAGTCGGACGTGTATAGCTTTGGAATATTATTGTTGGAGATCGTAACAAGTCGAAAAAACTACAACAATTATGACACAGAACGACCACTCAATCTGATAGGATACGCATGGGAATTGTGGGTGAATGGGAGAGGAGAAGAGCTGATTGATTTGGGTTTGTGCAATAACTGTGATGAGAAAGCAAAGGCTTTAAGGTGCATTCATGTTAGTCTTTTGTGCGTCCAACAAGTTCCAGCGGATAGGCCGACGATGTTGGATGTTTATTTCATGATTAATAATGATTCGACTCAACTTCCCTCTCCCAAACAACCTGCTTTTTTTGTTGCTCAAAACCCAAATTCCTCCCAACTACAACTGGTGGAGGTGGTCGATACTATGCTCATACAACCAGCTGCTGAGCCAACACTGGAAATTTCTTCATTCAATACTATGTCACTCTCACTCATGGGATTTGCGAGCCGTGAATTGCCGCGCACGAGCGATCCCTATTTGTGCTCTTCGACTCGGGCCAGTTTCTCAGCCATGTCGTCCAAGCAAGGAGGGAAGGCAAAGCCTTTGAAGCAACCCAAGGCTGAGAAGAAAGATTACGACGAGAGCACTAAAACCCACTCAGTCCGACCATCTCCAAGACCAGCTCTCGGGCCCACTTTGGAGCAGTCGTCGGTGTCTTACTATGCTTCTCTCCTCCAATCTTGCGTCGTCCGAAAGGCGATAGAGCCTGGAAAGCAGCTTCACGCTCGTATGTGGCAAATGGGTATTAGTTTCAACCCTCTCTTGGCTACTAAACTAGTCAATCTTTACTGCATCTGCAACTCTTTGATAAATGCTCATCTGTTGTTTGATAGAATTTCCAAACGAAATCTGTTCCTTTGGAATGTTATGATACGAGGTTATGCTTGGAATGGACCATATGAGGTTGCAATTTCACTTTACTACCAAATGCAAGATTATGGGCTTGTGCCCGATAAATTTACCTTCCCCTTTGTGCTCAAAGCTTGCTCGGCTCTTTCTGCCATGGAAGAGGGAAAGAAGATTCATAAAGATGTCTTACGCACTGGGTTGGAGAGCGATGTGTTTGTTGGTGCGGCCCTGATTGATATGTATGCTAAATGTGGTTGTGTAGAGAGTGCTCGACAGGTGTTTGATAAAATTGATGAGAGAGATGTTGTGTGTTGGAACTCCATGCTTGCAGCTTATTCTCAAAATGGGCAACCAGATGAGTCGCTTGCTCTCTGCAGAGTGATGGCTTTTGATGGAGTGAAGCCCACCGAGGGGACACTTGTCATCTCCATCTCAGCTTCAGCTGACAATGGCCTTCTACCTCAAGGGAAGGAGCTTCATGGTTATAGTTGGAGACATGGATTTGAATCGAATGACAAGGTGAAAACTGCATTGGTGGATATGTATGCCAAGAGTGGCTCGGTAAATGTTGCTAGGAGCTTGTTTGAGATATTGGAGGAGAAGAGGGTAGTCTCTTGGAACACCATGATCACTGGGTATGCAATGCATGGTCATGCTAATGAAGCTTTGGACCTGTTTAAGGAGATGAAAGGGAAAGCTTTACCTGATCATATAACTTTTGTTGGAGTTCTCGCTGCCTGCAGCCATGGAGGATTGCTTGATGAAGGGAAGATGTATTTCAGATCAATGGTAACTGATTACGTTATATGTCCTACTGTTCAACACTACACTTGTATGATTGATCTACTTGGTCATTGTGGTCATTTGGAAGAAGCTTACAACCTCATAATGGAAATGAGGGTAGAGCCTGATGCTGGTGTCTGGGGTGCATTGCTTCACTCATGCAAAATCCATGGCAATGTGGAGATGGGTGAGCTAGCTTTAGAGAAGTTGATTGAGCTTGAACCTGATGATGGTGGGAACTATGTGATTCTATCGAATATGTATGCTCAAGCTGGTAAATGGGAAGGAGTTGCAAGACTAAGGAATCTCATGATGGATAAGGGATTGAAGAAAAGTATTGCTTGTAGTTGGATAGAAGTGAAAAACAAAGTTCATGCCTTCTTGTCGGAAGATACTTCTCATCCTGAGTCTGAAGCAATTTATTCGGAGTTAAAACGGATAGGGAAGTTGATGAAAGAAGCTGGCTATGCACCGCAGATTGGGTCAGTTTTCCACGATGTTGAAGATGATGAAAAGGTTGATATGGTGTGTTGTCATAGTGAAAGATTGGCCATTGCTTTTGGACTCATTAGCACCCCTGTGGGAACTAAGCTCTTGATTATCAAGAACCTTCGAGTTTGTGAGGATTGCCATGTTGCAATCAAGTTCATATCGAAGATCACAGAGAGGGAAATTACTATTAGAGATGTTAATCGCTATCATCACTTCAAAGATGGACTCTGCTCTTGTGGTGATTTCTGGTGA 4398 42.09 MAIGNGTTTRILPFSCFLYCYYCFILVFFLVEFSHGQSTQTNNVLTQGQKLSIGSQLISSTANFMLGFYNPYNSNTTYLGISYNTNHQKPIWIANPNSPFPSNSTPISLTIDANGSFKIQNGHYSFSLFDVGQPTTSSAILQDDGNFVLRELNRDGSVKQILWQSFDHPTDTLLPGMKIGINHKTNSTWSLTSWRTIESPMAGAFTLAMNPNNTYQLLIFFRGALFWSSGNWKDGSFEFLQYLSNSDPYNSNQNQEMYINRISNENETFFIYYIPKFDRSPTPYAYRNLYYPKSGEFVLPQLRLEDGGNLGINDQSSYSVCSLFENEDGGCVWKEQQKIPECRNWLYGFSEPFSPRFGYMEEGINGSNYNKQSGNLTMFECETICIFDCDCIAIGFSDEEDGTSCEIWKSGATFNSVSAGSREYFFLDHTTQTGQVTGKMKRRFVCVMGFISEGFNILGIMIRQIRDGKKNPELQIFDFETIVSATNNFGDECKLGQGGFGPVYKGILTDGQEVAIKRLSKNSGQGLVEFKNETILIAKLQHTNLVRLIGCCIYKEEKLLVYEYMPNKSLDFFLFDSEKKLALNWEKRLHIIQGIVQGLLYLHYYSRVRIIHRDLKVSNILLDDEMNAKISDFGMARVFKPSEHEANTSRVVGTYGYISPEYAMEGIFSIKSDVYSFGILLLEIVTSRKNYNNYDTERPLNLIGYAWELWVNGRGEELIDLGLCNNCDEKAKALRCIHVSLLCVQQVPADRPTMLDVYFMINNDSTQLPSPKQPAFFVAQNPNSSQLQLVEVVDTMLIQPAAEPTLEISSFNTMSLSLMGFASRELPRTSDPYLCSSTRASFSAMSSKQGGKAKPLKQPKAEKKDYDESTKTHSVRPSPRPALGPTLEQSSVSYYASLLQSCVVRKAIEPGKQLHARMWQMGISFNPLLATKLVNLYCICNSLINAHLLFDRISKRNLFLWNVMIRGYAWNGPYEVAISLYYQMQDYGLVPDKFTFPFVLKACSALSAMEEGKKIHKDVLRTGLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLAAYSQNGQPDESLALCRVMAFDGVKPTEGTLVISISASADNGLLPQGKELHGYSWRHGFESNDKVKTALVDMYAKSGSVNVARSLFEILEEKRVVSWNTMITGYAMHGHANEALDLFKEMKGKALPDHITFVGVLAACSHGGLLDEGKMYFRSMVTDYVICPTVQHYTCMIDLLGHCGHLEEAYNLIMEMRVEPDAGVWGALLHSCKIHGNVEMGELALEKLIELEPDDGGNYVILSNMYAQAGKWEGVARLRNLMMDKGLKKSIACSWIEVKNKVHAFLSEDTSHPESEAIYSELKRIGKLMKEAGYAPQIGSVFHDVEDDEKVDMVCCHSERLAIAFGLISTPVGTKLLIIKNLRVCEDCHVAIKFISKITEREITIRDVNRYHHFKDGLCSCGDFW 1465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1938649 1946858 - ClG42_09g0021100.10 Clacu09g0211 256519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g0211 1465 Pfam D-mannose binding lectin 91 195 IPR001480 -
Clacu09g0211 1465 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 957 991 IPR002885 -
Clacu09g0211 1465 NCBIfam pentatricopeptide repeat 960 992 IPR002885 -
Clacu09g0211 1465 NCBIfam pentatricopeptide repeat 1033 1061 IPR002885 -
Clacu09g0211 1465 NCBIfam pentatricopeptide repeat 1060 1094 IPR002885 -
Clacu09g0211 1465 NCBIfam pentatricopeptide repeat 1161 1187 IPR002885 -
Clacu09g0211 1465 Pfam Protein tyrosine and serine/threonine kinase 493 701 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu09g0211 1465 Gene3D Tetratricopeptide repeat domain 1116 1222 IPR011990 GO:0005515(InterPro)
Clacu09g0211 1465 Gene3D Phosphorylase Kinase; domain 1 463 564 - -
Clacu09g0211 1465 MobiDBLite consensus disorder prediction 855 874 - -
Clacu09g0211 1465 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 459 564 - -
Clacu09g0211 1465 FunFam Pentatricopeptide repeat-containing protein mitochondrial 1112 1221 - -
Clacu09g0211 1465 Pfam PPR repeat 1033 1058 IPR002885 -
Clacu09g0211 1465 Pfam PPR repeat 1133 1159 IPR002885 -
Clacu09g0211 1465 Pfam PPR repeat 1233 1257 IPR002885 -
Clacu09g0211 1465 Pfam PPR repeat 1060 1089 IPR002885 -
Clacu09g0211 1465 Pfam Translation machinery associated TMA7 847 870 IPR015157 -
Clacu09g0211 1465 SUPERFAMILY Protein kinase-like (PK-like) 472 781 IPR011009 -
Clacu09g0211 1465 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1159 1193 IPR002885 -
Clacu09g0211 1465 Gene3D Tetratricopeptide repeat domain 888 1002 IPR011990 GO:0005515(InterPro)
Clacu09g0211 1465 Pfam PPR repeat family 1160 1205 IPR002885 -
Clacu09g0211 1465 Pfam PPR repeat family 957 1003 IPR002885 -
Clacu09g0211 1465 MobiDBLite consensus disorder prediction 845 883 - -
Clacu09g0211 1465 Gene3D - 37 167 IPR036426 -
Clacu09g0211 1465 SUPERFAMILY alpha-D-mannose-specific plant lectins 90 196 IPR036426 -
Clacu09g0211 1465 FunFam Pentatricopeptide repeat-containing protein At3g16610 969 1111 - -
Clacu09g0211 1465 SMART blect_4 42 169 IPR001480 -
Clacu09g0211 1465 Pfam E motif 1275 1337 IPR046848 -
Clacu09g0211 1465 FunFam Pentatricopeptide (PPR) repeat-containing protein 1222 1384 - -
Clacu09g0211 1465 Gene3D Transferase(Phosphotransferase) domain 1 565 773 - -
Clacu09g0211 1465 ProSiteProfiles Bulb-type lectin domain profile. 42 162 IPR001480 -
Clacu09g0211 1465 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 156 777 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Clacu09g0211 1465 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 565 769 - -
Clacu09g0211 1465 Gene3D Tetratricopeptide repeat domain 1003 1115 IPR011990 GO:0005515(InterPro)
Clacu09g0211 1465 SMART serkin_6 489 759 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g0211 1465 CDD STKc_IRAK 495 763 - -
Clacu09g0211 1465 Gene3D Tetratricopeptide repeat domain 1223 1293 IPR011990 GO:0005515(InterPro)
Clacu09g0211 1465 Pfam DYW family of nucleic acid deaminases 1373 1465 IPR032867 GO:0008270(InterPro)
Clacu09g0211 1465 ProSiteProfiles Protein kinase domain profile. 489 776 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g0211 1465 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1058 1092 IPR002885 -
Clacu09g0211 1465 CDD B_lectin 51 169 IPR001480 -
Clacu09g0211 1465 ProSitePatterns Serine/Threonine protein kinases active-site signature. 610 622 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g2051 Clacu-Chr2:33823401 Clacu09g0211 Clacu-Chr9:1938649 9.60E-94 dispersed
Clacu05g0869 Clacu-Chr5:7620615 Clacu09g0211 Clacu-Chr9:1938649 4.90E-87 dispersed
Clacu05g1123 Clacu-Chr5:10267074 Clacu09g0211 Clacu-Chr9:1938649 4.40E-121 dispersed
Clacu06g0512 Clacu-Chr6:5902645 Clacu09g0211 Clacu-Chr9:1938649 8.90E-117 dispersed
Clacu07g1528 Clacu-Chr7:29902650 Clacu09g0211 Clacu-Chr9:1938649 1.30E-136 dispersed
Clacu08g0985 Clacu-Chr8:19917087 Clacu09g0211 Clacu-Chr9:1938649 4.50E-127 dispersed
Clacu09g0211 Clacu-Chr9:1938649 Clacu09g0257 Clacu-Chr9:2360026 5.80E-162 dispersed
Clacu09g0256 Clacu-Chr9:2359086 Clacu09g0211 Clacu-Chr9:1938649 3.60E-66 dispersed
Clacu10g0041 Clacu-Chr10:818556 Clacu09g0211 Clacu-Chr9:1938649 1.20E-101 dispersed
Clacu10g0613 Clacu-Chr10:8300398 Clacu09g0211 Clacu-Chr9:1938649 6.70E-122 dispersed
Clacu10g0614 Clacu-Chr10:8321310 Clacu09g0211 Clacu-Chr9:1938649 4.00E-118 dispersed
Clacu10g1859 Clacu-Chr10:32252277 Clacu09g0211 Clacu-Chr9:1938649 9.10E-117 dispersed
Clacu11g0492 Clacu-Chr11:4654299 Clacu09g0211 Clacu-Chr9:1938649 2.40E-99 dispersed
Clacu09g0211 Clacu-Chr9:1938649 Clacu03g0123 Clacu-Chr3:1381749 3.30E-141 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73801 PF07714 PK_Tyr_Ser-Thr 3.70E-45 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g0211 - - - 0.0