Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g0229 ATGGAGATCAAAGAAAAGAAGAGAATTTCAAGTATCTCCTCTCCATTAATGTCATCCTCTTCGATGGCTATCCTCCTGGTTTTTCTTTGTTTCATTTTTAGCGATCCCAGCACAGCATTCGTAGCCGGGGCGGGCACTTCCTTCATTCCCAAAGATAATTTTCTCATTGACTGTGGTGCCAACAAGGAACTTGGTGCACTCCCTGATGGAAGAGTGTTCAAAACTGATGAGCAATCCAAGCAACTCTTAGATGCCAAGGATGATATCATAGCAACCGCTGCACCGGATAAGAAGGCACCGTCCCCGGTCGATTTGACAGCAAGAGTTTTCCTCCAAGAAGCTACTTACATTTTTCAGATGGCAGAGCCTGGATGGCATTGGGTGCGCCTACATTTCATGCCTGTTAAAAGCAATGACTTCGATCTCTTGCAGGCTAAATTTTCAGTAGCTACTGAAAAGTATGTGTTGCTTCACAGCTTCAACATCAACAATGAATCCACATTTGTTCTCAAGGAGTTTCTCCTCAATATCACTGAACCAAAACTGTCAATCAAGTTCTTCCCTATGAGGAACTCAGCCGCTTTCATCAATGCCATCGAGGTCGTTTCGGCTCCGGTGGACTTGATTGCTGACTCGAATGTGGAGCTGTCTCCAGTTGGGACTATTGAGGGCCTGACGAAATATGCATTTCAGACATTGTATAGGTTAAACATGGGAGGACCTATAATCAATCCAAGAAATGACACTCTTGGGAGGACATGGGAGACGGATGAAGTTTACAGGACACCCAAAGTTGCTGGTAGGAATGTGGTTGTTGAGACCAACACCATCAAATACCAAGGAGGATTGAAAGAAACAGGCATGTTAATTGCTCCTCCAAGTGTTTATGCAAGTGCAGTTCAAATGGGAGATGCTCAAGTTAGTGTACCAAATTTCAATATCACATGGAAATTTGAGGCAGATCCCTCATTTGGGTATCTAATTCGCTTCCATTTCTGTGACATTGTCAGCAAAGTACTCAATAATCTGTATTTTAATGTATATGTGAACGGGAAGGCTGCCATAACCAACTTGGATTTGTCACACAAGCTAGGAAGTTTGGCAACTGCATACTACAAGGATGTTGTGGTTAATGCTTCCCTGATTGTAGATGGACTGACAGTTCAAATTAGTCCAGCTAATGTCGAAACCGGTGATGCGAATGCCATTCTAAATGGCATAGAGGTATTGAAAATAAGCAATTCTGTTAATAGTCTGGATGGAGAGTTTGGAGTGGATGGTAGGTCGGCAAATGGGTCTAATCGTGGCACGGTCGCGGCTGTTGGGTTTGCGATGATGTTTGGGGCGTTTGTTGGGCTCGGTGCCATGGTGATGAAATGGCATAAAAGGCCTCAAGATTGGCAGAAGAGGAACAGTTTCTCTTCCTGGTTGCTTCCTGTACATGCTGGTGACTCAAGCTTTATGACAAGTAAGACTTCATATGGGTCACACAAGACCAACATTTACTCCTCTACTTTAGGCCTTGGTAGGTTCTTCACTTTGGCAGAACTACAAGAGGCCACAAAGAACTTTGATCCCAATTCAATAATTGGTGTTGGTGGGTTTGGAAATGTGTACCTTGGAGTGATTGATGAAGGGACCAAAGTTGCAGTTAAGAGAGGAAATCCACAATCTGAACAAGGCATAACAGAATTCCAAACAGAAATTCAAATGCTTTCCAAACTCAGACACAGGCATTTGGTTTCTTTGATCGGTTACTGTGATGAAAACGCTGAAATGATCTTGGTATATGAGTTCATGTCAAATGGCCCATTCAGAGATCATTTATATGGAAAGGACTTGTCTCCATTGTCATGGAAGCAAAGGCTAGAGATCTGTATCGGAGCGGCTCGAGGCCTTCATTACCTTCACACAGGAACAGCCCAGGGAATCATCCACCGTGATGTCAAAACAACCAACATTTTACTCGACGAAAACTTCACCGCCAAAGTCGCCGATTTCGGGCTGTCAAAGGATGCTCCAATGGGGCAAGGACATGTCAGTACTGCAGTGAAGGGAAGTTTTGGATATTTGGATCCAGAGTACTTTAGGAGGCAACAGTTGACAGAAAAATCAGATGTTTATTCCTTTGGAGTTGTTCTGCTTGAGGCTTTGTGTGCAAGGCCAGCAATCAACCCATCTTTGACAAGAGAACAAGTGAACTTGGCTGATTGGGCAATGCAATGTAAGAAAAAAGGGTGTTTGGAAAAGATAATGGATCCCCTTCTAGCTGGAGCCATAAATCCTGAGTCCATGAAGAAGTTTGCAGAAGCAGCAGAGAAGTGTCTTGCTGAACATGGTGTAGATAGGCCAAGCATGGGGGATGTATTGTGGAATTTGGAGTATGCATTACAACTTCAAGAAGCATTCTCACAAGGCAAGACTGAAGATGAAAACAAAGCTGCAGGCACAGCAACCGTTTCCCCCGCTACCCCTACCACTGTTGATGCTTCGACAAATGCACCGAACTCCGGCAACCGCCCTGTTGTGCAGCCAGAACAGAATAGGCAACCAGCAGAGGTACAAGCCATTGATGATCACTCAGGAAGTGCAATGTTTGCTCATTTTTCTAATCTCAATGGTAGATGA 2628 44.1 MEIKEKKRISSISSPLMSSSSMAILLVFLCFIFSDPSTAFVAGAGTSFIPKDNFLIDCGANKELGALPDGRVFKTDEQSKQLLDAKDDIIATAAPDKKAPSPVDLTARVFLQEATYIFQMAEPGWHWVRLHFMPVKSNDFDLLQAKFSVATEKYVLLHSFNINNESTFVLKEFLLNITEPKLSIKFFPMRNSAAFINAIEVVSAPVDLIADSNVELSPVGTIEGLTKYAFQTLYRLNMGGPIINPRNDTLGRTWETDEVYRTPKVAGRNVVVETNTIKYQGGLKETGMLIAPPSVYASAVQMGDAQVSVPNFNITWKFEADPSFGYLIRFHFCDIVSKVLNNLYFNVYVNGKAAITNLDLSHKLGSLATAYYKDVVVNASLIVDGLTVQISPANVETGDANAILNGIEVLKISNSVNSLDGEFGVDGRSANGSNRGTVAAVGFAMMFGAFVGLGAMVMKWHKRPQDWQKRNSFSSWLLPVHAGDSSFMTSKTSYGSHKTNIYSSTLGLGRFFTLAELQEATKNFDPNSIIGVGGFGNVYLGVIDEGTKVAVKRGNPQSEQGITEFQTEIQMLSKLRHRHLVSLIGYCDENAEMILVYEFMSNGPFRDHLYGKDLSPLSWKQRLEICIGAARGLHYLHTGTAQGIIHRDVKTTNILLDENFTAKVADFGLSKDAPMGQGHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLLEALCARPAINPSLTREQVNLADWAMQCKKKGCLEKIMDPLLAGAINPESMKKFAEAAEKCLAEHGVDRPSMGDVLWNLEYALQLQEAFSQGKTEDENKAAGTATVSPATPTTVDASTNAPNSGNRPVVQPEQNRQPAEVQAIDDHSGSAMFAHFSNLNGR 875
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 2110013 2112640 + ClG42_09g0022900.10 Clacu09g0229 256537
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g0229 875 MobiDBLite consensus disorder prediction 806 851 - -
Clacu09g0229 875 CDD STKc_IRAK 530 794 - -
Clacu09g0229 875 FunFam Receptor-like protein kinase FERONIA 229 414 - -
Clacu09g0229 875 PANTHER OS07G0166700 PROTEIN 512 801 IPR045272 GO:0004672(PANTHER)|GO:0004714(InterPro)|GO:0005886(PANTHER)|GO:0006468(InterPro)|GO:0009506(PANTHER)|GO:0046777(PANTHER)
Clacu09g0229 875 Gene3D Phosphorylase Kinase; domain 1 485 599 - -
Clacu09g0229 875 ProSitePatterns Protein kinases ATP-binding region signature. 530 552 IPR017441 GO:0005524(InterPro)
Clacu09g0229 875 Gene3D Transferase(Phosphotransferase) domain 1 600 821 - -
Clacu09g0229 875 FunFam Receptor-like protein kinase FERONIA 600 814 - -
Clacu09g0229 875 ProSiteProfiles Protein kinase domain profile. 524 796 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g0229 875 Gene3D - 228 414 - -
Clacu09g0229 875 Gene3D - 53 207 - -
Clacu09g0229 875 FunFam Putative receptor-like protein kinase 53 205 - -
Clacu09g0229 875 FunFam receptor-like protein kinase FERONIA 488 599 - -
Clacu09g0229 875 MobiDBLite consensus disorder prediction 806 862 - -
Clacu09g0229 875 ProSitePatterns Serine/Threonine protein kinases active-site signature. 644 656 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu09g0229 875 Pfam Protein tyrosine and serine/threonine kinase 529 788 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu09g0229 875 SMART serkin_6 524 796 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g0229 875 SUPERFAMILY Protein kinase-like (PK-like) 508 791 IPR011009 -
Clacu09g0229 875 Pfam Malectin-like domain 56 411 IPR024788 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1704 Clacu-Chr6:27730325 Clacu09g0229 Clacu-Chr9:2110013 2.40E-256 dispersed
Clacu09g0229 Clacu-Chr9:2110013 Clacu11g2025 Clacu-Chr11:31231577 2.40E-224 dispersed
Clacu11g2096 Clacu-Chr11:31737545 Clacu09g0229 Clacu-Chr9:2110013 7.00E-58 dispersed
Clacu01g2126 Clacu-Chr1:32899919 Clacu09g0229 Clacu-Chr9:2110013 1.70E-64 transposed
Clacu05g2821 Clacu-Chr5:35494863 Clacu09g0229 Clacu-Chr9:2110013 2.90E-74 transposed
Clacu11g0384 Clacu-Chr11:3501975 Clacu09g0229 Clacu-Chr9:2110013 1.40E-62 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73802 PF12819 Malectin_like 1.70E-36 CL0202 Clacu PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g0229 - - - 0.0