Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g0236 ATGAGAAAAGAAGAAAATCATATCAGGGCTAATATTGGGGAATTCCCTGGTAGAATTACACGTGCTCGGGCTGCTGCATTTAGTGCATCAGCACAGCTGCCTCCAAAAGTTCCTGCACATCATCAAGAGAGGCGGGTTGCCCGAGCTAATCTGAAAAGAGCTGCTTCTGAAGAAAATAGCTGCCATTCTATTGCTAAATCAGCTCGACCATGTAAAAGGAGGGCTGTGCTTCAGGATGTCAGCAATATAGGCTGTGAACCTTCGTACTCAAATTGTTTCAATGCAGCTAAAATTGAGCCCAATAGTAGTAAGCCGACAATCAGAAACCATCTCAAGAAGTCCAAAGGAGCCTCATCAGTTGGTGTGGCTAACTCCAAGGTTCCTCTAGGTCTTAGAACCAAAGGAGCTTCATCAGTTGGTGGGGCTTACTCCAAGCCTCTTGATCTTAGAACACAAGGTGTACAATCAAATGTCAAATCAAAAGCCAAGTTGAAAGTTGAGCATTCAAGTAATTCTGAAGACCCCGATACACATCATCGGGTAAGTGGTATAAAGGAAGAGGTCACAAGTGATTTTCGGGATGATAATTGGAGGTCTCAAAGTCCTTCAGAGTCTCAAAATTTTCAAAATAAAGATAAAGTGTTGCTTCTGGGGACAAAAAGCAACCTGGACATTGCAGACATTGATTGTAATGACAGAGATGCTCAGCTGTGCACTGTCTATGCCCAGGATATCTATAACAATTTACGTGTAGCTGAGCTAACCAGAAGACCACGTCCCAATTTCATGGAAACAGTGCAGACTGATATTACCCAAAGCATGCGGGGTATATTGGTTGATTGGCTTGTAGAGGTGTCGGAGGAATACAAGTTAGTACCAGATACACTCTACCTAACTGTTTTTTTCATCGATTGGTTTCTCTCCCAAAATTACATCGAGAGACAAAAGCTTCAACTGTTGGGTATCTCTTGCATGTTAATTGCCTCGAAGTATGAAGAAATTTGTGCACCACGTGTTGAAGACTTTTGTTTCATCACTGACAGCACCTACACAAAAGAGGAGGTACTGAATATGGAAGGTCAAATATTGAAGCATATGGGCTTTCAACTTTCTGCACCAACTGCAAAATCTTTCCTCAGGAGATATGTTCGAGCTGCACAAACGACATATAAGACCCCTAGTCTTGAACTCGAGTGCCTCGCCAACTATCTGGCTGAATTAACACTGGTTGACTACAGATTCCTGAATTTTCTTCCCTCAGTTATAGCTGCATCAGCTGTATTTCTTTCCAAATGGACGTTGGATCAGTCGAGTCACCCATGGAATTCAACACTGGAATATTATACCTCATATAAAGCATCAGATCTGAAACAAACTGTTGTTGCTTTACAAGATTTACAGTTGAACACCAACGGTTGTCCACTTAGTTCGATTCGTGTCAAGTATCGGCAAGAAAAGTTCAAAGCTGTTGCAACTTTGTCTTCCCCAAAATTACTTGATACGCTATTCTGA 1512 41.93 MRKEENHIRANIGEFPGRITRARAAAFSASAQLPPKVPAHHQERRVARANLKRAASEENSCHSIAKSARPCKRRAVLQDVSNIGCEPSYSNCFNAAKIEPNSSKPTIRNHLKKSKGASSVGVANSKVPLGLRTKGASSVGGAYSKPLDLRTQGVQSNVKSKAKLKVEHSSNSEDPDTHHRVSGIKEEVTSDFRDDNWRSQSPSESQNFQNKDKVLLLGTKSNLDIADIDCNDRDAQLCTVYAQDIYNNLRVAELTRRPRPNFMETVQTDITQSMRGILVDWLVEVSEEYKLVPDTLYLTVFFIDWFLSQNYIERQKLQLLGISCMLIASKYEEICAPRVEDFCFITDSTYTKEEVLNMEGQILKHMGFQLSAPTAKSFLRRYVRAAQTTYKTPSLELECLANYLAELTLVDYRFLNFLPSVIAASAVFLSKWTLDQSSHPWNSTLEYYTSYKASDLKQTVVALQDLQLNTNGCPLSSIRVKYRQEKFKAVATLSSPKLLDTLF 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2184445 2189174 + ClG42_09g0023600.10 Clacu09g0236 256544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g0236 503 Gene3D - 244 492 - -
Clacu09g0236 503 SMART cyclin_7 377 465 IPR013763 -
Clacu09g0236 503 SMART cyclin_7 280 364 IPR013763 -
Clacu09g0236 503 MobiDBLite consensus disorder prediction 131 208 - -
Clacu09g0236 503 Pfam Cyclin, C-terminal domain 373 495 IPR004367 -
Clacu09g0236 503 SMART Cyclin_C_2 373 496 IPR004367 -
Clacu09g0236 503 FunFam Mitotic cyclin 6 258 358 - -
Clacu09g0236 503 SUPERFAMILY Cyclin-like 373 498 IPR036915 -
Clacu09g0236 503 FunFam Cyclin A1 360 492 - -
Clacu09g0236 503 Gene3D - 258 371 - -
Clacu09g0236 503 CDD CYCLIN_AtCycA_like_rpt1 234 369 - -
Clacu09g0236 503 PANTHER CYCLINS 224 483 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Clacu09g0236 503 CDD CYCLIN_AtCycA-like_rpt2 373 487 - -
Clacu09g0236 503 MobiDBLite consensus disorder prediction 101 120 - -
Clacu09g0236 503 PIRSF Cyclin_A_B_D_E 35 502 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Clacu09g0236 503 MobiDBLite consensus disorder prediction 161 198 - -
Clacu09g0236 503 Pfam Cyclin, N-terminal domain 244 371 IPR006671 -
Clacu09g0236 503 SUPERFAMILY Cyclin-like 234 370 IPR036915 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0700 Clacu-Chr2:7212989 Clacu09g0236 Clacu-Chr9:2184445 1.00E-67 dispersed
Clacu05g1869 Clacu-Chr5:27892746 Clacu09g0236 Clacu-Chr9:2184445 5.30E-112 dispersed
Clacu08g1785 Clacu-Chr8:27240746 Clacu09g0236 Clacu-Chr9:2184445 3.30E-77 dispersed
Clacu09g0236 Clacu-Chr9:2184445 Clacu11g2051 Clacu-Chr11:31446050 8.90E-46 dispersed
Clacu08g0740 Clacu-Chr8:17279867 Clacu09g0236 Clacu-Chr9:2184445 3.10E-83 transposed
Clacu08g1445 Clacu-Chr8:24473222 Clacu09g0236 Clacu-Chr9:2184445 1.80E-95 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g0236 K06627 - csv:101222299 924.85