Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g0268 ATGTATGGAAGAAAAGCATGCCAGTTGGTGAAAGAGCTAGCAAGCGGTGAGAAAGGACAGCTAACACAGTTCAATAGCGACCTATTTGAACAGGTTATTTCAGAATGCCAGCAGCATCATCTTGAGCTTCAGTCCTTAATTAGGAAAGTACAGGAAGAAGGATTCGATCTTCAGACAACTAAGAATGAAGATCATTTTGGTGCGCTCATTCACCACCTTGCATTAGTTCGCAATAAACGCTGCCTTATGGCTTATGTGTATAATCGAGCTGAGATTATAAGAAGTTTGATATGGAAGGTAGTAGGGTCTATGATTCCACCGGAAATACAAGAGAAGCTCAGCAACTCAGAGGAAGAGTATTTCAAGAAGCATTCTGCACGTCTGAAAGAATATATGTCAAAACTGGAGTTGGATTTGACAGTGGATATGGTGCCACCTAAGGATCCTTATATCCAAGTGAGGGTGCTTGATGATATCGGTGAAGGAATCGTATTGAGTGATGATAAAACAGCAAATTTTGCGCTTCATTCCATACATTTTCTTAAACGAACAGACGCTGAACAATACATCTCACGGTTGTTAGCAAGCGATGTGTTTCCTGCATCTGTTGTGAAAGCAATTCTATATCCTGGAGCCATTGCAAAAGCCATCTTTAACAACAAACCTATTCCATCCTTTAATAGCTTGCCAAAGCTATACAAGTTTATCCATGTTAAACCAACAGCTTTTCCTCTCACCTCGGATCTCCATCACCTAGAGGTTATTGCAGGAAGTTATTTGGCAGTAGGAGGAGGTGTCATAGGAATGGTTAAAGCGGGGAGTGGGAGAATGAGTCTATTTGGTTGCCTTATCGCAATGTGGGGAATTGTTTGGAGGAAATCTTCAAATTTAAATCCCAATAAGGAAATTGGCCAAATCTATCCGACCATGTTTCTTGCTCTGCTTTTGGCTTTCTTGTCTGTTAGGAAGGATGTGAGGAGAATAGTACGTACCCTCAAACCTCAATCCAACCCTTTTTCTTCATGGAACAAACACAAGCACAAATGA 1047 40.97 MYGRKACQLVKELASGEKGQLTQFNSDLFEQVISECQQHHLELQSLIRKVQEEGFDLQTTKNEDHFGALIHHLALVRNKRCLMAYVYNRAEIIRSLIWKVVGSMIPPEIQEKLSNSEEEYFKKHSARLKEYMSKLELDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFALHSIHFLKRTDAEQYISRLLASDVFPASVVKAILYPGAIAKAIFNNKPIPSFNSLPKLYKFIHVKPTAFPLTSDLHHLEVIAGSYLAVGGGVIGMVKAGSGRMSLFGCLIAMWGIVWRKSSNLNPNKEIGQIYPTMFLALLLAFLSVRKDVRRIVRTLKPQSNPFSSWNKHKHK 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2424472 2429997 - ClG42_09g0026800.10 Clacu09g0268 256576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g0268 348 CDD GINS_B_Psf1 149 190 - -
Clacu09g0268 348 SUPERFAMILY GINS helical bundle-like 1 147 IPR036224 -
Clacu09g0268 348 Gene3D - 1 135 - -
Clacu09g0268 348 CDD GINS_A_psf1 3 137 IPR005339 GO:0000811(InterPro)|GO:0006260(InterPro)
Clacu09g0268 348 PANTHER PARTNER OF SLD5 1 192 IPR005339 GO:0000811(PANTHER)|GO:0000811(InterPro)|GO:0006260(InterPro)|GO:1902983(PANTHER)
Clacu09g0268 348 Pfam GINS complex protein helical bundle domain 63 135 IPR021151 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1477 Clacu-Chr8:24787543 Clacu09g0268 Clacu-Chr9:2424472 3.20E-29 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g0268 K10732 - csv:101205409 378.637