Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g0275 ATGCTTCAAAAGAAGGGTTGCCTCCCACTACTCAATCGAATCATTGGGGTTTCAGGCTGCTTAAACTTAGAGGGTTTTCAGATGACATATTTTCCTGGTTTAAGTAATCAAAGAGACTCCATGTTAGGTGATCAGAAACTTGGTTCTTCTTGCCAAGAACAGCCTCTTTGTTCTGGGAATTTGATGATGTTCATGAATCAAGACCCTTCTTGCAGAGATTATTCAGAGATTTTTTCTGGGGTTTCTTCAAACTATGTTGAAACTGTGGGAGATAGAAGTAATGTTGAAATGGCTTTCATTCCACCAGTTGTGGGAATTTTAGATGACTCAAATTTCCAATGTCAAGGTGTTTCACTTAGCCTTTCCACACACTCACCCTCTGTTGTTTCTATGCCTTCATTTCCTCACCAATATCAGACCCCTGCTATGCCTTCTTCATTCATCAATAATGCACCTCCTTTGATCTTCGAGAAGAGGCCGAATCTGAAACCTTCTATAAATGATGCGAAAAATGGCATGTATATAGCGGTGGGTTCTGGATATTCGACATTGAATTTGGTATACATCGAAGCTGCACAGCAGTTGCTCGACGAAATGGTTAGCATCCGCGAAGCTTTGAAAGAGTTGAAGTCTAAGAAACTCAAAGCTTCCAATGGTTTGGGTGTTGATTCCTGCAGAGAAAATGATGGTGGATCTAATGATTTGACTGGGGAGATGTGTGGCAATGTGAGGCAGTCGCCGATTGCCAATCCGTCAGGGGATCTATCGCCTACCGAACGTCAGGACTTGAAGAACAAAAACTCAAAGCTTTTGTCCTTGTTGGGTGAGGTGGATCGAAGATACAGGCAATATTACCAACAGCTGCAATATTTGGCGTCGTCTTTTGACATGGTAGCAGGCCGAGGGGCTGCAGATTTCTACACTGCACTCGCACACCAAACTATTTCGTGCCACTTTCGCCGCTTGCGAGATGCAATCAATGCACAGATTGAGGTCACCAGGAGAACCTTGGGGGAGCAAGATGCTTTACATTCTGGTCAAGAGGGCATTCCTCGTCTCCGCTTTGTCGACCAACACCTCAGGCAACAGAGAGCTCTTCAGCAGCTTGGTGTCACGCCACATAGTTGGAGGCCTCAACGAGGGCTTCCCGAAAGTTCCGTGTCGATTCTTCGCGCTTGGCTGTTCGAACACTTCCTCCATCCATATCCCAAGGACTCCGAGAAACTTAAGCTAGCTAGACAAACTGGCCTGACCAGAAACCAAGTCGCAAACTGGTTTATAAATGCACGTGTTCGGCTATGGAAACCAATGGTAGAGGAGATGTACAAAGAAGAATTTGGAGACTCCAACATTGACATCAAATCCTCACCAGAAAATGCATCCAAAGTATCATGGAACAATTCACTATTCTCCGAAGATAAGGGAGGAGACGAGATGCACGACAGCATGAAATCTGCAGCAAACAACGGCGAGCGAGTCCTCTACCGCCCGTGTGCTACCGACGACATGATCAACTCGAGTAACTTCTCAATGGGAGGAGGAGGAGATGTTTCACTTGCACTGGAGTTGAAGCATTGTGAAGGTGATGAATTTGGGATGTTTGGGAATAACAATAGAATGGTTGGTTCTGTGGAGCTTGAGGCACAAGATTTTCCATGTTTGGAACCAGAAAGACATCATCAATGCAGGCTCACAAGTTCAAATATGTTGCATGATTTTATTGGCCTGGATCTGTGTCGGTCTCATTCTTCCAAAACAACCACTAAGCTAAATTCAACTAACTTGCCTCCACATGCAGTGGCGGATTTTCACTCACTACTTCTTCTTCTTCTTCTTCTTCTTCCTCCTCATCACTGTTTTCACTTCACTGCAATTTCGTCGCGAAGTGGGGGAGGTTTGAGCTTGTGCGCGTTGAAACATCGATCTCCTGTAATACGCATCATGAAACGCCCCTTTCTATCTGTTACAATGGCGAAGAAGAGATGGCCGTTGATGATCTTAGCATTGGTTTCAATTTCCACGGCAATGGTTTTCTTCATGAGGACTACGTTCGATTCTTGTAGTGGTAATGGAAATAGACGTTTTGTGGAAGAAAATGGTATCGACTCACAGATTCGTTCCTCCCAAATCGAGAGAAAAGCTCCGAATCCTCTTGATTTCATGAAGTCCAAGCTCGTCCTCTTGGTCTCACATGAGCTCTCTCTTTCTGGTGGGCCTCTACTACTCATGGAGCTTGCATTTTTGTTGAGAGGCGTCGGTACTCAAGTTGTTTGGATTACCAATCAAAAGCCATCGGAGCCTGATGAAGTAGTGTACAGTTTGGAGCGCAAGATGTTAGATCGAGGAGTGCAGGTTTTATCTGCTAAGGGACAAGAAGCTGTGGAAACCGCTCTAAAAGCTCATTTGGTTGTTCTGAATACCGCTGTTGCTGGGAAATGGTTGGATGCTGTCCTTAAGGAAAATGTTCCCCGTGTCCTTCCCAAGGTTCTGTGGTGGATTCATGAGATGCGAGGGAATTATTTCAAAGTTGAGTATGTGAAGCACCTCCCTTTTGTTGCAGGTGCTATGATTGATTCACATACAACTGCAGAATACTGGAAAAACAGAACACGGGAACGTTTAGGGATTCAAATGCCTGAAACTTATGTCGTGCATCTTGGAAATAGTAAGGACCTTATGGAAGTGGCTGAAAATAATGTGGCCAAGAGGGTTCTTCGAGAGCATATTCGTGAATTCCTTGGAGTTCGGAATGAAGATATATTGTTTGCAATTATAAATAGTGTTTCGCGTGGGAAAGGTCAGGATTTATTTCTCCGGGCCTTTCATCAGAGCTTGCAAATGATCCAAGATAAAAAGCTGCGGGTACCAAGGATACATGCAGTGGTAGTTGGCAGTGACATGAGTGCTCAAACAAAGTTTGAAACAGAACTGCGCAACTTTGTGAATGAGAATAAAATTCAGGATCGTGTTCATTTTGTCAACAAAACCCTGTCTGTGGCTCCTTATCTCGCTTCTATTGATGTTCTTGTTCAAAACTCTCAGGGTAGGGGAGAATGCTTTGGAAGGATAACCATTGAAGCCATGGCGTTTCAACTACCTGTGCTGGGCACGGCTGCTGGAGGAACAATGGAGATCGTAGTGAACGGGTCAACGGGTTTGCTGCATCCTGCAGGGAAAGAAGGTGTAACTCCACTGGCACATAACATTGTGAAGTTAGCAACACACGTCGAGCGAAGGCTGACCATCGGAAAGAAAGGATATGAGAGGGTGAGGCAAATGTTCCTGGAACAACACATGGGGCAAAGAATTGCTGTTGTTTTGAAGAAAGTTCTGGAGAAAGCAAAGAGCCACTCTAGTCATTAG 3363 44.72 MLQKKGCLPLLNRIIGVSGCLNLEGFQMTYFPGLSNQRDSMLGDQKLGSSCQEQPLCSGNLMMFMNQDPSCRDYSEIFSGVSSNYVETVGDRSNVEMAFIPPVVGILDDSNFQCQGVSLSLSTHSPSVVSMPSFPHQYQTPAMPSSFINNAPPLIFEKRPNLKPSINDAKNGMYIAVGSGYSTLNLVYIEAAQQLLDEMVSIREALKELKSKKLKASNGLGVDSCRENDGGSNDLTGEMCGNVRQSPIANPSGDLSPTERQDLKNKNSKLLSLLGEVDRRYRQYYQQLQYLASSFDMVAGRGAADFYTALAHQTISCHFRRLRDAINAQIEVTRRTLGEQDALHSGQEGIPRLRFVDQHLRQQRALQQLGVTPHSWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKLKLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDSNIDIKSSPENASKVSWNNSLFSEDKGGDEMHDSMKSAANNGERVLYRPCATDDMINSSNFSMGGGGDVSLALELKHCEGDEFGMFGNNNRMVGSVELEAQDFPCLEPERHHQCRLTSSNMLHDFIGLDLCRSHSSKTTTKLNSTNLPPHAVADFHSLLLLLLLLLPPHHCFHFTAISSRSGGGLSLCALKHRSPVIRIMKRPFLSVTMAKKRWPLMILALVSISTAMVFFMRTTFDSCSGNGNRRFVEENGIDSQIRSSQIERKAPNPLDFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTQVVWITNQKPSEPDEVVYSLERKMLDRGVQVLSAKGQEAVETALKAHLVVLNTAVAGKWLDAVLKENVPRVLPKVLWWIHEMRGNYFKVEYVKHLPFVAGAMIDSHTTAEYWKNRTRERLGIQMPETYVVHLGNSKDLMEVAENNVAKRVLREHIREFLGVRNEDILFAIINSVSRGKGQDLFLRAFHQSLQMIQDKKLRVPRIHAVVVGSDMSAQTKFETELRNFVNENKIQDRVHFVNKTLSVAPYLASIDVLVQNSQGRGECFGRITIEAMAFQLPVLGTAAGGTMEIVVNGSTGLLHPAGKEGVTPLAHNIVKLATHVERRLTIGKKGYERVRQMFLEQHMGQRIAVVLKKVLEKAKSHSSH 1120
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2475124 2483777 + ClG42_09g0027500.10 Clacu09g0275 256583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g0275 1120 ProSiteProfiles 'Homeobox' domain profile. 373 436 IPR001356 GO:0003677(InterPro)
Clacu09g0275 1120 PANTHER GLYCOSYLTRANSFERASE 654 1117 - -
Clacu09g0275 1120 MobiDBLite consensus disorder prediction 238 258 - -
Clacu09g0275 1120 Pfam Associated with HOX 188 326 IPR006563 -
Clacu09g0275 1120 SMART HOX_1 376 440 IPR001356 GO:0003677(InterPro)
Clacu09g0275 1120 CDD homeodomain 376 437 IPR001356 GO:0003677(InterPro)
Clacu09g0275 1120 Gene3D Glycogen Phosphorylase B; 894 1094 - -
Clacu09g0275 1120 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 721 1112 - -
Clacu09g0275 1120 Pfam Homeobox KN domain 393 432 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Clacu09g0275 1120 SMART prehox3 170 328 IPR006563 -
Clacu09g0275 1120 Pfam Glycosyl transferases group 1 907 1088 IPR001296 GO:0016757(InterPro)
Clacu09g0275 1120 FunFam UDP-Glycosyltransferase superfamily protein 896 1094 - -
Clacu09g0275 1120 CDD GT4_PimA-like 753 1104 - -
Clacu09g0275 1120 MobiDBLite consensus disorder prediction 225 262 - -
Clacu09g0275 1120 Coils Coil 189 212 - -
Clacu09g0275 1120 Gene3D - 373 450 - -
Clacu09g0275 1120 SUPERFAMILY Homeodomain-like 377 443 IPR009057 -
Clacu09g0275 1120 Pfam Glycosyl-transferase family 4 722 901 IPR041693 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g1298 Clacu-Chr7:27803828 Clacu09g0275 Clacu-Chr9:2475124 2.20E-37 dispersed
Clacu09g0275 Clacu-Chr9:2475124 Clacu11g0554 Clacu-Chr11:5221210 1.40E-91 dispersed
Clacu09g0275 Clacu-Chr9:2475124 Clacu10g1809 Clacu-Chr10:31768159 9.50E-72 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48276 PF00534 Glycos_transf_1 2.60E-20 CL0113 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g0275 - - - 0.0