Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g0279 ATGGAAGGTGCTTCGCTTCACGGAACGCTTCACGCCACAATCTATGAAGTCGACAGGTTGCATACTGGTGGTGGATCCAATCTCTTCAGCATGTTGAAGCAAAACTTTGAGGAGGCTGTTGGAATTGGCAAAGGTGAAACCAAACTATATGCGACTATAGATTTAGAAAAGGCTAGGGTTGGGAGGACACGAATATTGGAAACTGAACCCTCTAATCCAAGATGGTATGAATCTTTTCACATTTACTGTGCCCATAAGGCATCAAATGTTATCTTCACCGTGAAGGATGATAATCCCATTGGTGCAACTTTGATTGGACGTGCATATGTACCTGTGGAAGACATCTTGGATGGGGAGGAAGTTGACAGATGGGTTCCAATCTTAGATGAAGAGAAAAATCCAATTGAAGGAGAATCAAAGATTCATGTAAAGCTTCAATACTTCAGTGTTACTAAAGATCGCAACTGGGGTCGTGGTATAAGAAGTCGTAAATTTCCTGGAGTTCCCTATACATATTACTCACAGAGACAAGGTTGTAAGGTTTCTTTGTATCAAGATGCTCATATCCCCGATAATTTTATTCCTAAAATTCCTCTTGCTGGAGGAAAAAATTATGCTCCCGCCAGATGTTGGGAAGATATTTTTGATGCCATACAAAATGCCAAACACCTGATCTACATCACAGGATGGTCTGTTTATACAGAAATTGCCTTGGTTAGGGACTCAAGGAGGCCAAAGCCAGGCGGAGACACCATGCTTGGTGAACTTCTTAAGAAGAAAGCAAGTGAAGGGGTCAGAGTTCTTATGCTTGTCTGGGATGACAGAACATCAGTCGGTTTACTTAAAAAAGATGGTCTGATGGCTACTCATGATGAAGAAACTGAACGTTACTTCCAAGATACAGATGTGCACTGTGTCTTGTGTCCTCGTAATCCTGATGATGGTGGAAGCATTGTTCAAGATCTACAAATCTCTACCATGTTCACTCATCACCAGAAGATTGTTGTGGTGGATAGCCCAATGCCAAGTGGAGAGTCAGATAAGAGGAGAATTGTGAGTTTCGTTGGTGGCATTGATCTATGTGATGGTAGGTATGACACACCCTTTCACTCCCTTTTCAGGACATTGGATACTGCACATCATGACGATTTCCATCAACCAAATTTTGCTGGTGCATCAATAACAAAAGGTGGACCGAGGGAACCTTGGCACGATATCCATTCCCGGCTTGAAGGGCCCATTGCCTGGGATGTTTTGTTCAATTTTGAGCAAAGGTGGAGGAAACAAGGTGGGAAGGATGTACTTGTGCAGCTACGAGAGCTTGATGAAATAATTATTCCTCCGTCTCCTGTTATGTACCCAGACGACCATGACACCTGGAATGTTCAGTTGTTTAGATCAATAGATGGTGGGGCAGCTTTTGGCTTTCCTGAGACCCCTGAAGATGCTGCTAGAGCTGGTCTTGTCAGTGGGAAAGATAACATTATTGATAGAAGCATTCAGGACGCTTACATTAATGCCATTCGGCGGGCTAAGAATTTTATTTATATTGAAAACCAATATTTCCTTGGAAGTTGTTTTGGATGGTCTCCTGATAATATCAAGCCTGAGGATATTGGTGCCTTGCACTGTATCCCAAGGGAGCTTTCCCTCAAGATCGTTAGTAAGATTTTAGCAGGAGAAAGGTTCACTGTCTATGTTGTTGTCCCAATGTGGCCAGAAGGTCTCCCAGAAAGTGGATCGGTTCAGGCAATATTAGATTGGCAGAGGAGGACATTTGAAATGATGTATAAAGACGTGATTCAGGCTCTTAGAGATCAAGGTAGCGAAGAAGACCCTCGCAACTACTTGACATTCTTCTGTCTTGGCAACCGGGAAGTCAAGAGGTCTGGAGAATATCAACCTGCAGAGGCACCAGAGGAGGATTCTGATTATTTAAGAGCCCAGCAGGCCAGGCGTTTCATGATTTATGTTCACACCAAGATGATGATTGTTGATGATGAGTACATAATTGTTGGATCGGCGAATATCAACCAGAGATCCATGGATGGTGCAAGGGACTCTGAGATAGCAATGGGCGCTTATCAGCCATATCATCTGTCAGCCCGGGAACCTGCACGTGGTCAAGTTCACGGATTCCGTATGGCTCTATGGTATGAACATCTTGGTATGCTTGATGAATCTTTCCTTCGTCCAGAAAGTGAAGAATGTGTTGCAAAGGTAAACAGAATTGCTGATAAGTATTGGGATCTGTATTCAAGTGAATCACTCGAGAGGGACTTGCCCGGTCACCTCCTCCGCTATCCAGTTGGCATATCCAGTGAAGGAGAAGTCACAGAACTTCCAGGATTCGAGTTCTTCCCCGACACCAAAGCTCGTATACTCGGGACGAAATCCGACTACCTCCCTCCTATCCTCACTACCTAG 2427 43.96 MEGASLHGTLHATIYEVDRLHTGGGSNLFSMLKQNFEEAVGIGKGETKLYATIDLEKARVGRTRILETEPSNPRWYESFHIYCAHKASNVIFTVKDDNPIGATLIGRAYVPVEDILDGEEVDRWVPILDEEKNPIEGESKIHVKLQYFSVTKDRNWGRGIRSRKFPGVPYTYYSQRQGCKVSLYQDAHIPDNFIPKIPLAGGKNYAPARCWEDIFDAIQNAKHLIYITGWSVYTEIALVRDSRRPKPGGDTMLGELLKKKASEGVRVLMLVWDDRTSVGLLKKDGLMATHDEETERYFQDTDVHCVLCPRNPDDGGSIVQDLQISTMFTHHQKIVVVDSPMPSGESDKRRIVSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFAGASITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGKDVLVQLRELDEIIIPPSPVMYPDDHDTWNVQLFRSIDGGAAFGFPETPEDAARAGLVSGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSCFGWSPDNIKPEDIGALHCIPRELSLKIVSKILAGERFTVYVVVPMWPEGLPESGSVQAILDWQRRTFEMMYKDVIQALRDQGSEEDPRNYLTFFCLGNREVKRSGEYQPAEAPEEDSDYLRAQQARRFMIYVHTKMMIVDDEYIIVGSANINQRSMDGARDSEIAMGAYQPYHLSAREPARGQVHGFRMALWYEHLGMLDESFLRPESEECVAKVNRIADKYWDLYSSESLERDLPGHLLRYPVGISSEGEVTELPGFEFFPDTKARILGTKSDYLPPILTT 808
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2499428 2503204 + ClG42_09g0027900.10 Clacu09g0279 256587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g0279 808 FunFam Phospholipase D delta 201 444 - -
Clacu09g0279 808 Pfam C2 domain 44 126 IPR000008 -
Clacu09g0279 808 CDD C2_plant_PLD 6 148 - -
Clacu09g0279 808 SMART C2_3c 9 124 IPR000008 -
Clacu09g0279 808 Gene3D Endonuclease Chain A 200 442 - -
Clacu09g0279 808 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 326 364 IPR001736 GO:0003824(InterPro)
Clacu09g0279 808 ProSiteProfiles C2 domain profile. 1 125 IPR000008 -
Clacu09g0279 808 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 149 IPR035892 -
Clacu09g0279 808 CDD PLDc_pPLDalpha_2 492 701 - -
Clacu09g0279 808 Pfam Phospholipase D Active site motif 656 681 IPR001736 GO:0003824(InterPro)
Clacu09g0279 808 Pfam Phospholipase D Active site motif 327 364 IPR001736 GO:0003824(InterPro)
Clacu09g0279 808 FunFam Phospholipase D 467 700 - -
Clacu09g0279 808 PANTHER PHOSPHOLIPASE D 12 795 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Clacu09g0279 808 SUPERFAMILY Phospholipase D/nuclease 442 738 - -
Clacu09g0279 808 SMART pld_4 654 681 IPR001736 GO:0003824(InterPro)
Clacu09g0279 808 SMART pld_4 326 364 IPR001736 GO:0003824(InterPro)
Clacu09g0279 808 SUPERFAMILY Phospholipase D/nuclease 151 436 - -
Clacu09g0279 808 Pfam Phospholipase D C terminal 726 798 IPR024632 -
Clacu09g0279 808 Gene3D C2 domain 7 157 IPR035892 -
Clacu09g0279 808 PIRSF PLD_plant 1 808 IPR011402 GO:0004630(InterPro)|GO:0005509(InterPro)|GO:0016020(InterPro)|GO:0046470(InterPro)
Clacu09g0279 808 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 654 681 IPR001736 GO:0003824(InterPro)
Clacu09g0279 808 Gene3D Endonuclease Chain A 480 698 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g1366 Clacu-Chr7:28479150 Clacu09g0279 Clacu-Chr9:2499428 1.90E-172 dispersed
Clacu08g1564 Clacu-Chr8:25477023 Clacu09g0279 Clacu-Chr9:2499428 2.10E-196 dispersed
Clacu09g0279 Clacu-Chr9:2499428 Clacu10g0341 Clacu-Chr10:4306257 3.00E-200 dispersed
Clacu07g1268 Clacu-Chr7:27519475 Clacu09g0279 Clacu-Chr9:2499428 0.00E+00 wgd
Clacu08g1488 Clacu-Chr8:24856431 Clacu09g0279 Clacu-Chr9:2499428 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g0279 K01115 - csv:101206113 1610.51