Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g0332 ATGCCGGTTGACGGTTCTTCAACTGCCGCCTCCACCGTATGCGTCACCGGCGCCGGCGGCTTCATTGCCTCATGGATCGTCAAACTCCTCCTCCAGAAAGGCTATATCGTAAGAGGAACCGTCAGAAATCCAGAGGATCCGAAGAACCGCCATTTGAGAGAACTCGAAGGTGCGGCGGAGCGGCTCAGTTTGCATAAAGCGGATCTTCTCGATTTCGAAAGCCTCAGAGCGGCGATCGACGGCTGCGATGGCGTTTTCCACACTGCGTCGCCTGTGACTGACGATCCGGAGCAAATGGTGGAACCGGCGGTTAACGGAACGAAGAACGTCATAATCGCGGCAGCCGAAGCCAATGTCCGTCGCGTGGTGTTCACTTCCTCGATTGGTGCAGTCTACATGGACCCCAACCGTGGTCCAGACGACATCGTCGACGAGTCCTGTTGGAGCGATCTCGAGTTCTGTAAGAACACAAAGAATTGGTATTGCTATGGAAAAGCTGTGGCGGAGCAAGCCGCATGGGAGGTTGCGAAGGAGAAGGGGGTGGATTTGGTGGTGGTGAATCCAGTGCTGGTGCTAGGGCCATTGTTGCAATCCACCATTAATGCGAGCATAATTCATATACTGAAGTACTTGACTGGATCAGCTAAGACGTATGCCAATTCCGTTCAGGCATACGTACACGTGAAGGATGTGGCTCTAGCTCATATCCTTGTGTACGAGACTCCCTCCGCCGCCGGCCGGTACCTCTGCGCCGAGAGTGTGCTTCACAGAGGGGAGGTTGTTGAGATTCTGGCCAAATTGTTCCCGGAATATCCTGTTCCTACCAAGTGCTCAGATGAAGTGAACTCGAGGAAGAAGGCATACAACTTCTCCAACAAGAAGCTGAAGGACTTGGGATTGGAGTTCACTCCAGCAAAGCAGTGTTTATACGACACCGTTAAGAGCCTACAAGAGAAAGGTCATCTCCCAATTCCCACTTCTACTCAACCAGTTGACTCCATTCGAATTCAATCTTGA 1017 52.41 MPVDGSSTAASTVCVTGAGGFIASWIVKLLLQKGYIVRGTVRNPEDPKNRHLRELEGAAERLSLHKADLLDFESLRAAIDGCDGVFHTASPVTDDPEQMVEPAVNGTKNVIIAAAEANVRRVVFTSSIGAVYMDPNRGPDDIVDESCWSDLEFCKNTKNWYCYGKAVAEQAAWEVAKEKGVDLVVVNPVLVLGPLLQSTINASIIHILKYLTGSAKTYANSVQAYVHVKDVALAHILVYETPSAAGRYLCAESVLHRGEVVEILAKLFPEYPVPTKCSDEVNSRKKAYNFSNKKLKDLGLEFTPAKQCLYDTVKSLQEKGHLPIPTSTQPVDSIRIQS 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2828996 2835120 + ClG42_09g0033200.10 Clacu09g0332 256640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g0332 338 Gene3D - 4 337 - -
Clacu09g0332 338 FunFam Cinnamoyl-CoA reductase 1 4 335 - -
Clacu09g0332 338 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 11 317 IPR036291 -
Clacu09g0332 338 CDD FR_SDR_e 13 300 - -
Clacu09g0332 338 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 12 315 IPR050425 GO:0016616(PANTHER)
Clacu09g0332 338 Pfam NAD dependent epimerase/dehydratase family 13 245 IPR001509 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g2351 Clacu-Chr2:36580555 Clacu09g0332 Clacu-Chr9:2828996 1.40E-84 dispersed
Clacu02g2359 Clacu-Chr2:36637662 Clacu09g0332 Clacu-Chr9:2828996 1.50E-78 dispersed
Clacu05g2470 Clacu-Chr5:32822844 Clacu09g0332 Clacu-Chr9:2828996 6.60E-62 dispersed
Clacu09g0332 Clacu-Chr9:2828996 Clacu10g1294 Clacu-Chr10:25869989 6.00E-147 dispersed
Clacu09g0332 Clacu-Chr9:2828996 Clacu11g2087 Clacu-Chr11:31671316 2.80E-75 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g0332 K09753 - csv:101213412 632.098