Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g0339 ATGATCCATTTGTTTGCTGAGAATTTGTGGAGCCATTCTTCACTTGTTGTTACTTTTGATTTTGATTTTGATTTGTTTCGAAGGAAGTTAACGCCAGCATCTTCGACTTGGAAAATGGGGATATATCTCAGCTCCCCCAAAACAGAAAAGGCCTCAGATGATGGTGAGAATGAAAGACTTCGGTATGGCCTATCCTCTATGCAAGGGTGGCGTGCAACCATGGAAGATGCTCATGCAGCCTATCTAGATTTGGACACTTCAACATCTTTCTTTGGTGTTTATGATGGCCATGGAGGTAAAGCAGTTTCAAAGTTCTGTGCCAAGTATCTTCACCGACAGGTGCTCAAGCATGAATCATACATGGCTGGAGATTTGGGAACTTCTCTGCAGAAGGCCTTTCTCAGAATGGATGAGATGATGCGTGGACAAAGAGGATGGAGAGAATTAGCTATTTTAGGAGACAAAATGGACAAGATTTCTGGTATGATAGAAGGATTTATATGGTCGCCCAAGGGTAGTGAAGCTAACAACCAAGTGGATGATTGGCCTCCGGAGGAGGGACCTCACTCTGACTTTCATGGACCAAATGCTGGAAGCACAGCCTGTGTTGCAATCATACGAAATAACCAACTTGTGGTGGCAAATGCTGGTGATTCTCGCTGTGTCATTTCCAGAAAGGGTCAGGCATATAATCTATCCAAAGATCACAAGCCTGATCTTGAGGTTGAGAAGGACAGGATTCTGAAAGCCGGTGGTTTCATCCGAGTTGGTCGTGTCAATGGAAGTCTCAACTTGGCTCGGGCTATAGGAGACATGGAATTTAAGCAGAATAAAAGTATGCCTGCAGAAAAGCAGATTGTAACTGCCAATCCAGATGTGACAACTGTTGAGCTTTGTGAGGACGACGAGTTTCTTGTTATTGCCTGTGATGGGATCTGGGATTGCATGTCCAGCCAACAACTGGTTGACTACATTGGAGATCAACTAAAATCGGAAAGTAAACTCTCAGTCATTTGTGAGAGAGTGTTTGACAGATGCTTGGCACCCACAGCTGGCGGTGAAGGATGTGACAACATGACTATGATCTTGGTTCAGTTTAAGAAACCCTTCAACAACCCAAATGCTGCTTCTACTTCTGCTGAGGAGCTGCCTTCATCGTCCAATCAAACGTTGTCTGGTCTGAATGAAGGCTCTTCGAAGACTTAA 1206 44.36 MIHLFAENLWSHSSLVVTFDFDFDLFRRKLTPASSTWKMGIYLSSPKTEKASDDGENERLRYGLSSMQGWRATMEDAHAAYLDLDTSTSFFGVYDGHGGKAVSKFCAKYLHRQVLKHESYMAGDLGTSLQKAFLRMDEMMRGQRGWRELAILGDKMDKISGMIEGFIWSPKGSEANNQVDDWPPEEGPHSDFHGPNAGSTACVAIIRNNQLVVANAGDSRCVISRKGQAYNLSKDHKPDLEVEKDRILKAGGFIRVGRVNGSLNLARAIGDMEFKQNKSMPAEKQIVTANPDVTTVELCEDDEFLVIACDGIWDCMSSQQLVDYIGDQLKSESKLSVICERVFDRCLAPTAGGEGCDNMTMILVQFKKPFNNPNAASTSAEELPSSSNQTLSGLNEGSSKT 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2882172 2887353 - ClG42_09g0033900.10 Clacu09g0339 256647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g0339 401 MobiDBLite consensus disorder prediction 374 401 - -
Clacu09g0339 401 Pfam Protein phosphatase 2C 195 351 IPR001932 -
Clacu09g0339 401 Pfam Protein phosphatase 2C 61 142 IPR001932 -
Clacu09g0339 401 SMART PP2C_4 51 364 IPR001932 -
Clacu09g0339 401 Gene3D - 38 367 IPR036457 -
Clacu09g0339 401 CDD PP2Cc 61 366 IPR001932 -
Clacu09g0339 401 ProSiteProfiles PPM-type phosphatase domain profile. 61 366 IPR001932 -
Clacu09g0339 401 ProSitePatterns PPM-type phosphatase domain signature. 90 98 IPR000222 GO:0043169(InterPro)
Clacu09g0339 401 SUPERFAMILY PP2C-like 41 368 IPR036457 -
Clacu09g0339 401 SMART PP2C_SIG_2 66 366 IPR001932 -
Clacu09g0339 401 PANTHER PROTEIN PHOSPHATASE 2C 56 367 IPR015655 GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0006470(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu09g0339 Clacu-Chr9:2882172 Clacu09g0481 Clacu-Chr9:4141035 3.10E-33 dispersed
Clacu05g1773 Clacu-Chr5:26860648 Clacu09g0339 Clacu-Chr9:2882172 9.90E-163 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g0339 K17499 - csv:101214132 706.827