Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g0340 ATGATTATCACTGTGAAGGATTCGACTATGGTGACTCCGGCGGAGGAGACGCCGCATCGGAGCCTCTGGAATTCCAACGTCGATCTCGTGGTGCCGAGTATGCATACGCCGAGCGTCTACTTCTACCGCCCTACCGGCGCCTCTAATTTCTTCGACGCTCAGGTTCTCAAGGAAGGCCTAAGCAAGGCGCTGGTTCCGTTTTATCCAATGGCCGGACGGTTGAGACGCGATGAAGACGGTCGAATCGAGATCAACTGTAATGCCGAAGGTGTGCTTCTTGTCGAGGCTGAGACCACGGCGGTTATCGACGATTTCGGTGATTTCGCGCCTACGTTGCAGCTCCGGCAGCTTATTCCGGCAGTAGATTACTCCGGCGGAATCGAGTCGTACCCCTTGCTGGTGTTACAGGTGACACACTTCAAATGCGGTGGCGTTTCCCTCGGCGTCGGAATGCAGCACCATGTAGCGGACGGCTTCTCCGGTCTCCACTTCGTCAACACTTGGTCCGACATGTCGCGTGGCATCGACCTCAAGCTCCGGCCTTACATCGACCGGACCCTCCTCCGTGCGCGGGACCCACCTCAACCGACCTTCCGACACATCGAATATCAACCGGCCCCACCCATGAAAATCCCGGTCCAGCCCGACCCGGACGGAACCACCGTCTCCATTTTCAAATTCACCCGGGAGCAGCTTAATTTACTCAAAGCCAAATCCAAAGAAAACGGCAACACCACCAACTACAGCTCCTACGAGATGCTCTCCGGCCACGTATGGCGGTGCACGTGCAAGGCTCGTGACCTTCCGGAGGATCAAGACACTAAGCTTTACATTGCCACCGACGGTCGTGCCCGGTTGCGCCCGCCGCTCCCCAACGGTTACTTTGGCAATGTCATCTTCACAACGACGCCGCTCGCCGTCGCCGGCGAACTAATGTCGAATCCGACGTGGTTCGCAGCCGGGAAGATCCACGACGCCTTGGCTCGGATGGATAACGATTATTTGAGGTCGGCTTTGGACTATCTCGAGATTCAGCCAAACATATCGGCGTTGGTCCGTGGTGCTCATACTTTCCGGTGCCCCAATTTGGGGATCACGAGCTGGGTCAGACTGCCGATTCACGACGCCGATTTCGGGTGGGGCCGGCCGATTTTTATGGGCCCCGGCGGAATCGCATACGAGGGATTGTCGTTTATAATCCCGAGTGCTTCGGACGACGGCAGCTTGTCGGTGGCGCTTTCGCTGCAGAATCGACATATGAAGGTGTTTGAGAAGCTGTTCTTTGATATTTGA 1293 56.46 MIITVKDSTMVTPAEETPHRSLWNSNVDLVVPSMHTPSVYFYRPTGASNFFDAQVLKEGLSKALVPFYPMAGRLRRDEDGRIEINCNAEGVLLVEAETTAVIDDFGDFAPTLQLRQLIPAVDYSGGIESYPLLVLQVTHFKCGGVSLGVGMQHHVADGFSGLHFVNTWSDMSRGIDLKLRPYIDRTLLRARDPPQPTFRHIEYQPAPPMKIPVQPDPDGTTVSIFKFTREQLNLLKAKSKENGNTTNYSSYEMLSGHVWRCTCKARDLPEDQDTKLYIATDGRARLRPPLPNGYFGNVIFTTTPLAVAGELMSNPTWFAAGKIHDALARMDNDYLRSALDYLEIQPNISALVRGAHTFRCPNLGITSWVRLPIHDADFGWGRPIFMGPGGIAYEGLSFIIPSASDDGSLSVALSLQNRHMKVFEKLFFDI 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2907260 2910935 + ClG42_09g0034000.10 Clacu09g0340 256648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g0340 430 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 4 421 IPR050317 GO:0016747(PANTHER)
Clacu09g0340 430 Gene3D - 211 430 IPR023213 -
Clacu09g0340 430 MobiDBLite consensus disorder prediction 196 215 - -
Clacu09g0340 430 FunFam Tryptamine hydroxycinnamoyl transferase 209 428 - -
Clacu09g0340 430 FunFam Spermidine hydroxycinnamoyl transferase 1 203 - -
Clacu09g0340 430 Gene3D - 1 205 IPR023213 -
Clacu09g0340 430 Pfam Transferase family 2 425 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2205 Clacu-Chr5:30628176 Clacu09g0340 Clacu-Chr9:2907260 3.70E-07 dispersed
Clacu06g1910 Clacu-Chr6:29445677 Clacu09g0340 Clacu-Chr9:2907260 4.90E-77 dispersed
Clacu09g0340 Clacu-Chr9:2907260 Clacu11g0962 Clacu-Chr11:10519042 1.20E-43 dispersed
Clacu09g0340 Clacu-Chr9:2907260 Clacu05g2044 Clacu-Chr5:29373737 1.80E-39 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g0340 K13065 - csv:101214857 846.269