Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu09g0347 | ATGGCGAAGATCTCACATCCTTCGCACAACAATTCCATTTCCTCCACTGCTAATCCTCATTCTTCTCCAATTCGTCACAGCCAGAAGAAGGTACTGAAGCGCACGCGTAAGTCCGCTCCTCGAGATGCTCCCGCTCAGCGTAGCTCTGTATACCGCGGAGTCACTAGGCATAGATGGACGGGACGGTATGAGGCGCATTTGTGGGATAAGAATAGCTGGAATGAAGGACAGAATAAGAAAGGAAGACAAGGTTCTTTAATCTGTTTTTCTTTTTTCTCTTTGATGAATCTGCAATGTTTAGAGCCGATCCTGATTTTACTGTTCTTTGGTCTGCCTCTGTTTTGCGGTTGCGGTGGTTCATTGATGGAATCTGAACCGAAACGCGCAGTGTATTTAGGAGCGTATGATGATGAAGAAGCAGCGGCTCATGCTTACGATCTTGCAGCGCTCAAGTACTGGGGAACTGAAACTGTTCTCAACTTTCCAATATTAACGTACCGAGCCGAGCTTAAAGAAATGGAAGGTCAATCAAGAGAAGAGTATATTGGATATTTGAGAAGGAAGAGTAGCGGCTTTTCTCGTGGGGTTTCAAAGTACAGAGGTGTAGCAAGGCACCATCATAATGGAAGATGGGAAGCTCGAATTGGCAGAGTGTTTGGCAATAAATACCTTTACCTTGGAACATATGCTACCCAAGAAGAAGCTGCCGCTGCCTACGACAAAGCGGCCATAGAATACCGCGGCCTTAACGCCGTTACAAATTTCGACCTCAGCCGTTACATCAAATGCCTCCGTCCTGGGGAACAGAATATCCCCAACAATAATAACCGTCCGCCAAACCCTAACGCCGGCGAAACTACGTCACAATTGGACCCCAATTCCCTCCTCGGATTCACCTTTCCGTCGCAATGTTCGAGCTCCGGCCAACCTGCCACCGAGCCACTGCCGGAACCTGGCGACGGTGACTCCTCCTCATCGTCCGCGGCGCTGGAGCTCCTACTCAATTCCTCAAAATTTAAAGACATAATAGAAAGAACATCCGCCGCCGAGGCTCCACAGACGCCGCCGGAATCTGACCGGCCGCGCCGCTGTATTCCCGACGACATTCAAACTTACTTCGATTGTACTCAAGATCCCGGCGACATTGCCGAAGGCGACGACAGCATTTTTGGGTACCTAAATTCGTTTTTACCTTCATCAGTTTTTCACTGCGAACTTGATGCTTAA | 1227 | 48.74 | MAKISHPSHNNSISSTANPHSSPIRHSQKKVLKRTRKSAPRDAPAQRSSVYRGVTRHRWTGRYEAHLWDKNSWNEGQNKKGRQGSLICFSFFSLMNLQCLEPILILLFFGLPLFCGCGGSLMESEPKRAVYLGAYDDEEAAAHAYDLAALKYWGTETVLNFPILTYRAELKEMEGQSREEYIGYLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAAAYDKAAIEYRGLNAVTNFDLSRYIKCLRPGEQNIPNNNNRPPNPNAGETTSQLDPNSLLGFTFPSQCSSSGQPATEPLPEPGDGDSSSSSAALELLLNSSKFKDIIERTSAAEAPQTPPESDRPRRCIPDDIQTYFDCTQDPGDIAEGDDSIFGYLNSFLPSSVFHCELDA | 408 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 2992537 | 2998801 | - | ClG42_09g0034700.10 | Clacu09g0347 | 256655 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu09g0347 | 408 | Gene3D | AP2/ERF domain | 197 | 258 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu09g0347 | 408 | PRINTS | Ethylene responsive element binding protein signature | 51 | 62 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu09g0347 | 408 | PRINTS | Ethylene responsive element binding protein signature | 144 | 164 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu09g0347 | 408 | Pfam | AP2 domain | 197 | 248 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu09g0347 | 408 | ProSiteProfiles | AP2/ERF domain profile. | 50 | 162 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu09g0347 | 408 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 36 | 284 | - | - | |
Clacu09g0347 | 408 | MobiDBLite | consensus disorder prediction | 1 | 51 | - | - | |
Clacu09g0347 | 408 | FunFam | AP2-like ethylene-responsive transcription factor | 197 | 258 | - | - | |
Clacu09g0347 | 408 | SUPERFAMILY | DNA-binding domain | 197 | 258 | IPR016177 | GO:0003677(InterPro) | |
Clacu09g0347 | 408 | CDD | AP2 | 197 | 258 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu09g0347 | 408 | Gene3D | AP2/ERF domain | 50 | 164 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu09g0347 | 408 | SUPERFAMILY | DNA-binding domain | 126 | 163 | IPR016177 | GO:0003677(InterPro) | |
Clacu09g0347 | 408 | ProSiteProfiles | AP2/ERF domain profile. | 198 | 256 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu09g0347 | 408 | SMART | rav1_2 | 198 | 262 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu09g0347 | 408 | SMART | rav1_2 | 50 | 168 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu09g0347 | 408 | MobiDBLite | consensus disorder prediction | 266 | 326 | - | - | |
Clacu09g0347 | 408 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Clacu09g0347 | 408 | MobiDBLite | consensus disorder prediction | 268 | 312 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu06g1362 | Clacu-Chr6:24483120 | Clacu09g0347 | Clacu-Chr9:2992537 | 2.70E-105 | dispersed | |
Clacu09g0347 | Clacu-Chr9:2992537 | Clacu10g1480 | Clacu-Chr10:27915146 | 3.00E-68 | dispersed | |
Clacu09g0347 | Clacu-Chr9:2992537 | Clacu05g2399 | Clacu-Chr5:32311312 | 5.90E-72 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48282 | PF00847 | AP2 | 8.50E-12 | CL0081 | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu09g0347 | K09285 | - | csv:101206499 | 579.326 |