Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g0347 ATGGCGAAGATCTCACATCCTTCGCACAACAATTCCATTTCCTCCACTGCTAATCCTCATTCTTCTCCAATTCGTCACAGCCAGAAGAAGGTACTGAAGCGCACGCGTAAGTCCGCTCCTCGAGATGCTCCCGCTCAGCGTAGCTCTGTATACCGCGGAGTCACTAGGCATAGATGGACGGGACGGTATGAGGCGCATTTGTGGGATAAGAATAGCTGGAATGAAGGACAGAATAAGAAAGGAAGACAAGGTTCTTTAATCTGTTTTTCTTTTTTCTCTTTGATGAATCTGCAATGTTTAGAGCCGATCCTGATTTTACTGTTCTTTGGTCTGCCTCTGTTTTGCGGTTGCGGTGGTTCATTGATGGAATCTGAACCGAAACGCGCAGTGTATTTAGGAGCGTATGATGATGAAGAAGCAGCGGCTCATGCTTACGATCTTGCAGCGCTCAAGTACTGGGGAACTGAAACTGTTCTCAACTTTCCAATATTAACGTACCGAGCCGAGCTTAAAGAAATGGAAGGTCAATCAAGAGAAGAGTATATTGGATATTTGAGAAGGAAGAGTAGCGGCTTTTCTCGTGGGGTTTCAAAGTACAGAGGTGTAGCAAGGCACCATCATAATGGAAGATGGGAAGCTCGAATTGGCAGAGTGTTTGGCAATAAATACCTTTACCTTGGAACATATGCTACCCAAGAAGAAGCTGCCGCTGCCTACGACAAAGCGGCCATAGAATACCGCGGCCTTAACGCCGTTACAAATTTCGACCTCAGCCGTTACATCAAATGCCTCCGTCCTGGGGAACAGAATATCCCCAACAATAATAACCGTCCGCCAAACCCTAACGCCGGCGAAACTACGTCACAATTGGACCCCAATTCCCTCCTCGGATTCACCTTTCCGTCGCAATGTTCGAGCTCCGGCCAACCTGCCACCGAGCCACTGCCGGAACCTGGCGACGGTGACTCCTCCTCATCGTCCGCGGCGCTGGAGCTCCTACTCAATTCCTCAAAATTTAAAGACATAATAGAAAGAACATCCGCCGCCGAGGCTCCACAGACGCCGCCGGAATCTGACCGGCCGCGCCGCTGTATTCCCGACGACATTCAAACTTACTTCGATTGTACTCAAGATCCCGGCGACATTGCCGAAGGCGACGACAGCATTTTTGGGTACCTAAATTCGTTTTTACCTTCATCAGTTTTTCACTGCGAACTTGATGCTTAA 1227 48.74 MAKISHPSHNNSISSTANPHSSPIRHSQKKVLKRTRKSAPRDAPAQRSSVYRGVTRHRWTGRYEAHLWDKNSWNEGQNKKGRQGSLICFSFFSLMNLQCLEPILILLFFGLPLFCGCGGSLMESEPKRAVYLGAYDDEEAAAHAYDLAALKYWGTETVLNFPILTYRAELKEMEGQSREEYIGYLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAAAYDKAAIEYRGLNAVTNFDLSRYIKCLRPGEQNIPNNNNRPPNPNAGETTSQLDPNSLLGFTFPSQCSSSGQPATEPLPEPGDGDSSSSSAALELLLNSSKFKDIIERTSAAEAPQTPPESDRPRRCIPDDIQTYFDCTQDPGDIAEGDDSIFGYLNSFLPSSVFHCELDA 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2992537 2998801 - ClG42_09g0034700.10 Clacu09g0347 256655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g0347 408 Gene3D AP2/ERF domain 197 258 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu09g0347 408 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu09g0347 408 PRINTS Ethylene responsive element binding protein signature 144 164 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu09g0347 408 Pfam AP2 domain 197 248 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu09g0347 408 ProSiteProfiles AP2/ERF domain profile. 50 162 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu09g0347 408 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 36 284 - -
Clacu09g0347 408 MobiDBLite consensus disorder prediction 1 51 - -
Clacu09g0347 408 FunFam AP2-like ethylene-responsive transcription factor 197 258 - -
Clacu09g0347 408 SUPERFAMILY DNA-binding domain 197 258 IPR016177 GO:0003677(InterPro)
Clacu09g0347 408 CDD AP2 197 258 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu09g0347 408 Gene3D AP2/ERF domain 50 164 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu09g0347 408 SUPERFAMILY DNA-binding domain 126 163 IPR016177 GO:0003677(InterPro)
Clacu09g0347 408 ProSiteProfiles AP2/ERF domain profile. 198 256 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu09g0347 408 SMART rav1_2 198 262 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu09g0347 408 SMART rav1_2 50 168 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu09g0347 408 MobiDBLite consensus disorder prediction 266 326 - -
Clacu09g0347 408 MobiDBLite consensus disorder prediction 1 25 - -
Clacu09g0347 408 MobiDBLite consensus disorder prediction 268 312 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1362 Clacu-Chr6:24483120 Clacu09g0347 Clacu-Chr9:2992537 2.70E-105 dispersed
Clacu09g0347 Clacu-Chr9:2992537 Clacu10g1480 Clacu-Chr10:27915146 3.00E-68 dispersed
Clacu09g0347 Clacu-Chr9:2992537 Clacu05g2399 Clacu-Chr5:32311312 5.90E-72 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48282 PF00847 AP2 8.50E-12 CL0081 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g0347 K09285 - csv:101206499 579.326