Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g0358 ATGGCCCTTAAATCAAAGCAAACTAATGAGTTCATTTTCCGTTCAAAGCTTCCCGATATTTACATTCCCAATCATCTTCCACTCCACGATTACGTTTTCCAAAATCTCCCAAAATTCGCCTCACGCCCCTGTTTGATCAACTCCGCCACCGGCGATGTTTACTCCTTCCACGACGTTCACCTAACGGCCCGTCGTGTCGCCGCCGGCTTACACAACCTCGGAATTAAAAAGGGCGATGTCGTCATGAATTTACTTCCCAACTCCCCGGAGTTCGTCTTCACCTTCCTCGCCGCGTCGTACCGAGGCGCCATCATGACGGCGGCGAACCCTTTTTACACGGCCGTGGAAATCGCCAAACAGGTCAAAGCCGCCAATGCGAAATTGATCGTGACGATGGCTTGCTTTTACGATCGGGTTAAGGATTTGGCTGAAAATGGTGTGAAAATTGTATGCGTTGATTTTGCTGTCGAGGGTTGTTTGCATTTCTCTGTGTTGACTGGGGCTGATGAATCTCACTCGCCGCCGGTGGATTTTTCCCCCGAAGACGTGGTGGCGCTGCCGTACTCCTCCGGCACCACCGGTTTGCCGAAGGGTGTTATGTTAACTCATAAAGGGTTAATCACAAGCGTGGCTCAACAAATGGACGGCCAAAATCCAAACCTCTACTATCATCGCGATGACGTCATCCTCTGTGTGCTGCCGTTTTTCCACATCTATTCACTCAATTCCATTTTGCTGTGCGGGCTACGCGCCGGTGCTGCGATTATGATTATGCAGAAATTTGAGATAATTTCACTTTTACAATTGATTGAGAAATACAAAATTTCGATCATGCCCATCGTGCCGCCGATCTTACTGGCCATTGCTAAGTCGTCGGAATTTGAGAAATACGACGTGTCGTCCGTGAGGGTTCTAAAATCCGGCGGAGCGCCACTGGGGAAGGAGTTGGAAGACGCCGTGAGGGCGAAATTTCCGGCGGCGATTCTTGGGCAAGGGTACGGAATGACCGAGGCCGGTCCGGTTCTGACAATGAGTTTGGCTTTTGCGAAAGAGCCGTTTCAAGTGAAAGCCGGAGCATGTGGAACTGTGGTTCGAAATGCAGAGATGAAGATTGTTGACCCGGAAACCGGCGCGTCCTTGCCGGCGAATTCGGCCGGAGAGATTTGTATTAGGGGTGATCAAATCATGAAGGGGTATTTGAATGATTTGGAGTCTACGAAGAGAACAATTGATAAAGAAGGATGGCTTCACACCGGCGACATGGGCTACATCGACGACGACGACGAGCTCTTCATCGTGGACCGGCTTAAGGAACTTATCAAATTCAAGGCATTTCAAGTGGCGCCTGCGGAGGTGGAGGCCCTTCTTATCAGTCATCCTAAACTCTGTGACGCTGCGGTTATTGGGATGCCGGACGTGGAGGCGGGAGAAGTACCGGTGGCATTTGTTGTGAAGGAGAACAGTGACACAATAACGGAAGAAGAGGTAAAGCAATTCATAACAAAACAAGTGGTATTCTACAAGAGGCTAAAACGTGTGTTTTTTGTCAACGCTATTCCGAAGGCGCCATCTGGCAAAATCCTTAGAAAAGAACTAAGGGCAAAATTTGCTTCTGCTGCTTACAATTAA 1629 49.23 MALKSKQTNEFIFRSKLPDIYIPNHLPLHDYVFQNLPKFASRPCLINSATGDVYSFHDVHLTARRVAAGLHNLGIKKGDVVMNLLPNSPEFVFTFLAASYRGAIMTAANPFYTAVEIAKQVKAANAKLIVTMACFYDRVKDLAENGVKIVCVDFAVEGCLHFSVLTGADESHSPPVDFSPEDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQMDGQNPNLYYHRDDVILCVLPFFHIYSLNSILLCGLRAGAAIMIMQKFEIISLLQLIEKYKISIMPIVPPILLAIAKSSEFEKYDVSSVRVLKSGGAPLGKELEDAVRAKFPAAILGQGYGMTEAGPVLTMSLAFAKEPFQVKAGACGTVVRNAEMKIVDPETGASLPANSAGEICIRGDQIMKGYLNDLESTKRTIDKEGWLHTGDMGYIDDDDELFIVDRLKELIKFKAFQVAPAEVEALLISHPKLCDAAVIGMPDVEAGEVPVAFVVKENSDTITEEEVKQFITKQVVFYKRLKRVFFVNAIPKAPSGKILRKELRAKFASAAYN 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3096563 3098191 + ClG42_09g0035800.10 Clacu09g0358 256666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g0358 542 Pfam AMP-binding enzyme 37 400 IPR000873 -
Clacu09g0358 542 CDD 4CL 22 532 - -
Clacu09g0358 542 SUPERFAMILY Acetyl-CoA synthetase-like 11 538 - -
Clacu09g0358 542 FunFam Long-chain-fatty-acid--CoA ligase FadD 14 437 - -
Clacu09g0358 542 Pfam AMP-binding enzyme C-terminal domain 451 526 IPR025110 -
Clacu09g0358 542 Gene3D - 5 436 IPR042099 -
Clacu09g0358 542 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 7 533 - GO:0016405(PANTHER)
Clacu09g0358 542 FunFam 4-coumarate--CoA ligase 2 438 539 - -
Clacu09g0358 542 ProSitePatterns Putative AMP-binding domain signature. 186 197 IPR020845 -
Clacu09g0358 542 Gene3D - 437 539 IPR045851 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu09g0358 Clacu-Chr9:3096563 Clacu10g1274 Clacu-Chr10:25579120 5.40E-222 dispersed
Clacu09g0357 Clacu-Chr9:3086589 Clacu09g0358 Clacu-Chr9:3096563 7.90E-290 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g0358 K01904 - csv:101218361 983.015