Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g0379 ATGGAGCTTGGCCTGAGCTTGGGCGACGCCCCCAAGCCCTTCCGCTTCGTCGAGAAGCAACCGCAAGTACCGCCGCCACAGCGAGTTCTTTCCCGGCCAGATTTAGGGTTCTGTGTCGACTTGTCGATTGGCCGTCCGTTTGTCGGAGAGAAAGAAGACGACGAAGAAAAACCTAATCAGAGAGAAGATGAATCCGACGCTAATGAAGATCCACCGATTCAACTCGATCTTCTCCCTCATAATCCCGTTCCTCGAAACCTAACTAATCCGTACCAAGGATTCCCATGGCCGTCGTCCGAAAACGATGAAGGCGAAGACCGAACCGCATCGCCGAACAGCGCAGCGTCGTCGTTTCAGATGGAATTTGGACTATACGGCGGCGGAGGAAACATTTCCTGCCGGAGAGATCAAATTGAAAATGGCGTAATGAACGAAGTAGGTGAATCTGGAAGAGCGTCTTCTAGAGCTAGCGATGAAGACGAAAATGGCTGTACGAGGAAGAAACTCAGACTCTCTAAAGAACAATCCGCTTTCCTTGAAGAAAGCTTCAAAGAACACAACACTTTAAACCCTAAACAGAAGCTAGCACTGGCTAAGCAACTGAATCTTCTTCCTCGCCAAGTGGAAGTTTGGTTCCAAAACAGAAGGGCTAGGACGAAATTGAAGCAAACGGAAGTGGATTGCGAGTATTTGAAAAGATGTTGTGAGACATTAACAGAAGAGAACAGACGGCTTCAAAAGGAGCTTCAAGAATTAAGAGCTTTGAAAACAACGAACTCATTCTACATGCAATTACCAGCCACAACACTCACCATGTGTCCTTCTTGTGAAAGAGTAACCTCAACTTCCGCCGCTTCCACCGTCGCTGCCGTCGCCACCAGTGGAGGCAAATCGACGGAGGGAGTTTCAAAACGATCTGGGTTCGCCATTGCTGGCCGACCCAGTTCTTCCTCTTTCCCATTTTCTGCTAAAACGCAGTCCCACCAGTCAACAGCTTCATGA 1002 48.9 MELGLSLGDAPKPFRFVEKQPQVPPPQRVLSRPDLGFCVDLSIGRPFVGEKEDDEEKPNQREDESDANEDPPIQLDLLPHNPVPRNLTNPYQGFPWPSSENDEGEDRTASPNSAASSFQMEFGLYGGGGNISCRRDQIENGVMNEVGESGRASSRASDEDENGCTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLLPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTTNSFYMQLPATTLTMCPSCERVTSTSAASTVAAVATSGGKSTEGVSKRSGFAIAGRPSSSSFPFSAKTQSHQSTAS 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3340058 3341305 + ClG42_09g0037900.10 Clacu09g0379 256687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g0379 333 SMART halz 222 265 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu09g0379 333 ProSiteProfiles 'Homeobox' domain profile. 162 222 IPR001356 GO:0003677(InterPro)
Clacu09g0379 333 Gene3D - 170 220 - -
Clacu09g0379 333 MobiDBLite consensus disorder prediction 292 333 - -
Clacu09g0379 333 CDD homeodomain 166 223 IPR001356 GO:0003677(InterPro)
Clacu09g0379 333 ProSitePatterns 'Homeobox' domain signature. 197 220 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Clacu09g0379 333 SUPERFAMILY Homeodomain-like 159 223 IPR009057 -
Clacu09g0379 333 Pfam Homeobox associated leucine zipper 222 256 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu09g0379 333 SMART HOX_1 164 226 IPR001356 GO:0003677(InterPro)
Clacu09g0379 333 MobiDBLite consensus disorder prediction 46 68 - -
Clacu09g0379 333 MobiDBLite consensus disorder prediction 310 333 - -
Clacu09g0379 333 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 57 290 IPR050762 -
Clacu09g0379 333 MobiDBLite consensus disorder prediction 1 32 - -
Clacu09g0379 333 FunFam Homeobox-leucine zipper protein HAT22 170 216 - -
Clacu09g0379 333 Coils Coil 228 258 - -
Clacu09g0379 333 Pfam Homeodomain 166 220 IPR001356 GO:0003677(InterPro)
Clacu09g0379 333 MobiDBLite consensus disorder prediction 46 113 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu09g0379 Clacu-Chr9:3340058 Clacu10g1929 Clacu-Chr10:32910367 6.60E-13 dispersed
Clacu01g0610 Clacu-Chr1:6358856 Clacu09g0379 Clacu-Chr9:3340058 2.40E-35 transposed
Clacu01g1858 Clacu-Chr1:30745039 Clacu09g0379 Clacu-Chr9:3340058 1.00E-53 transposed
Clacu06g1491 Clacu-Chr6:25842700 Clacu09g0379 Clacu-Chr9:3340058 4.80E-41 transposed
Clacu07g0663 Clacu-Chr7:12501115 Clacu09g0379 Clacu-Chr9:3340058 1.10E-34 transposed
Clacu10g0244 Clacu-Chr10:2951263 Clacu09g0379 Clacu-Chr9:3340058 1.30E-51 transposed
Clacu10g0841 Clacu-Chr10:16316330 Clacu09g0379 Clacu-Chr9:3340058 3.00E-51 transposed
Clacu10g1262 Clacu-Chr10:25470460 Clacu09g0379 Clacu-Chr9:3340058 1.60E-46 transposed
Clacu10g1746 Clacu-Chr10:31003534 Clacu09g0379 Clacu-Chr9:3340058 5.40E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48284 PF00046 Homeodomain 4.90E-15 CL0123 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g0379 K09338 - csv:101221600 577.785