Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g0400 ATGGCGAAGACTAGGGCTCATGAGCTATCGCGAGCGTTAGCAGGTGATACATGCACAATTCGGCTGACTGAAATTTTCGGGAGGGCGACCAAGTCTATTTTGGGCTTCTTTATCATGGTGGGTCTTTGCAATGGCGTGCATTACCTTTTGAGGCCATTTTCTCAACCTCGCATTACCTCTGATACGATCGTAGGTTTGGCTGTTGGCAACTTCATAAGGAAGGAACTTGATATATCAACGATTAAGACGCTGCGTTATATCGTCGACTTTGGTATGATATGCTATATGTTTGTGCTGGGATTGGAGGTGGATCCATATGTACTCTTCAAAGCACCTACACGTGATGCTAAGGTAGCTTATGCTGGAATGATTTCGACACTCATCTTAGCCTGTTCCATAATCCCATTTATTAGCTTTGCAAAGTCAAAAGAGATCAGTTTCATAATCTCCCTCTCAACTGTCCTCTCTAGCACTGCTTCTCCTGTACTAACCCGTTTGATTACCAGTCTTAAAATCGGTAGGTCAGATATAGGCCAGCTCGTCATTGCTGCCGGAATGCATTCTGATTTTATATCCACTCTCATGATCTGTATTGGTTATCTCTTTTGCAAATGCCAAGAGACACGCATCTCCCTTATAAAAGGTTTTCAATTAGGTATTCTATTATTGATCCAGTCAGTACTGACAGCGAAGGTTTCACCGGTATTCATGAACTGGGTAAATAATGAAAACCCCGAGGGTAAACCTATGAAAGGTCCTCACCTGGTTCTTGCAGTTGCTTTCATGGCCTTCCTTTGCGGTTGCCCTACTGTATTTGGTTACAATCCGATTCTCAGTGCATTTTTAGCTGGAACATTTTTACCTCGAGAAGGTAGAGTATCAAGATGGGCAATTGGAAAAATTAACTACCTGCTTACTACCGTTTTCTATCCCATCTTCTTCTTTTGGATGGGGGTTGAATCCAAGTTGAGTGACTTTGAACCTGGACAAATAATGACATGGATTAGGTTAATTCTGCTTTTTGCTATTGTAACCGTAGGAAAAGTTGTTGGTACTGTCATTGCTGGGGCAATTTTGGGGTTCCATTGGCCTGAATCAGTAGCACTTGGGCTGCTGTTAACCATGAAGGGCCATTTTCATATATACTTGGCTATTGCTGCAAAAACAGCTGGAAAGATAACTACATCTACGAGCTTGGTGATGGTAATTGTAATCTTCTTCACAGTCGTGCATGCTCCAAAAGTTGTAGCACATATAATCAAGAGGGCAAGGAAACGCACACCTACACATCGAATGGCTCTCCAATTGCTTGATCCATCAAGTGAGCTTAAGATCTTGTTATGTATACATGGACCTCAGAACACTGCAGCAGCCATTAACATCATGGAGATTTCTCGGGGGACAGCTAACCCTGGAGTTGTTGTATATGTCACAGACATGATTGAACTTACAGATGAAATAGCATCCACATTAGTTCAAGGTGAAGGAGTGGACACCGTGACTGTAACCCACACAGGAGTGACACAAATGAGAGACCAAGTTACTTCTGCAGTTCAGAGCTATGTAGATGAAAATGGAGAAGGGATTACTCTTAGGAGAATGTTAGCTCTCTCAACATTCAATTCTATGGCTCAGGACATTTGCATTTTGGCAGAGGAATTGATGGGAGCTCTTATCATACTGCCATTCCACAAGAGCCAGCGTGGAGATGGGTCGTTGAGTGAGGGCCAAGCAGCTTTCCGATATGTAAACCGCAAGGTTCTCAGGCATGCCCCCTGCTCTGTGGGAATCCTAGTGGATCGAGGTCTTGGATCAGTGGAGAAAATTTCGAGGTCGTATGTATCTCAAAGTGTGGCAGTCATCTTCATTGGCGGTAAAGATGACCGAGAAGCATTAGCCTATGCCGGTCGAGTAGCAAGGCATCCCGGAGTTAAACTCTCTGTGATTAGATTCTTGGTGGATGCTGATGCAGAAAATGCTGCAAGAAGAGCTGGGACTTACAGGATAAGTGTTGCTGAGCAGGAAGAGGAAATGAGACAAGACGATGAATGCTTTGCCTATTTTTACGAAAGGCATGTGGCTGGTGGGCACGTTGCGTACGTTGAAAAACACCTGGCCAGTTCCTCCGAGACGTATTCTACTTTGAAATCACTGGAAGGGCAATACGCCCTCATAATCGTAGGTCGAGGTGGGAAGGTCAACTCGGTGTTAACTTTTGGGATGAATGACTGGCAACAGTGTCCAGAACTGGGTCCTATAGGGGACATTCTTTCCGGGTCTGAATTCTCTGTTAGGACCTCAGTTTTGATCATCCATCAACACAATCTAAAAGGAGAACTAGATGGACTTGATGATGACTTTTCAATTATGTAG 2373 43.95 MAKTRAHELSRALAGDTCTIRLTEIFGRATKSILGFFIMVGLCNGVHYLLRPFSQPRITSDTIVGLAVGNFIRKELDISTIKTLRYIVDFGMICYMFVLGLEVDPYVLFKAPTRDAKVAYAGMISTLILACSIIPFISFAKSKEISFIISLSTVLSSTASPVLTRLITSLKIGRSDIGQLVIAAGMHSDFISTLMICIGYLFCKCQETRISLIKGFQLGILLLIQSVLTAKVSPVFMNWVNNENPEGKPMKGPHLVLAVAFMAFLCGCPTVFGYNPILSAFLAGTFLPREGRVSRWAIGKINYLLTTVFYPIFFFWMGVESKLSDFEPGQIMTWIRLILLFAIVTVGKVVGTVIAGAILGFHWPESVALGLLLTMKGHFHIYLAIAAKTAGKITTSTSLVMVIVIFFTVVHAPKVVAHIIKRARKRTPTHRMALQLLDPSSELKILLCIHGPQNTAAAINIMEISRGTANPGVVVYVTDMIELTDEIASTLVQGEGVDTVTVTHTGVTQMRDQVTSAVQSYVDENGEGITLRRMLALSTFNSMAQDICILAEELMGALIILPFHKSQRGDGSLSEGQAAFRYVNRKVLRHAPCSVGILVDRGLGSVEKISRSYVSQSVAVIFIGGKDDREALAYAGRVARHPGVKLSVIRFLVDADAENAARRAGTYRISVAEQEEEMRQDDECFAYFYERHVAGGHVAYVEKHLASSSETYSTLKSLEGQYALIIVGRGGKVNSVLTFGMNDWQQCPELGPIGDILSGSEFSVRTSVLIIHQHNLKGELDGLDDDFSIM 790
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3546904 3550646 + ClG42_09g0040000.10 Clacu09g0400 256708

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g0400 790 PANTHER CATION/H + ANTIPORTER 37 775 IPR050794 GO:0006885(PANTHER)|GO:0012505(PANTHER)|GO:0015672(PANTHER)
Clacu09g0400 790 Pfam Sodium/hydrogen exchanger family 49 419 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
Clacu09g0400 790 Gene3D - 443 743 - -
Clacu09g0400 790 Gene3D - 29 429 IPR038770 -
Clacu09g0400 790 FunFam Cation/H(+) antiporter 28 30 429 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g0400 K26731 - - csv:101211645 1475.3
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu09g0400 Clacu-Chr9:3546904 Clacu09g1294 Clacu-Chr9:13800997 1.80E-85 dispersed
Clacu09g0400 Clacu-Chr9:3546904 Clacu07g0488 Clacu-Chr7:6006470 7.70E-60 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g1119 Blo06g00594 . . . . Bpe10g00541 . . . . . . . . Sed09g1353 . . Bhi09g00656 Tan06g0598 Cmetu01g0797 . . . . . . . . . . . . Cone20ag1063 . . Lsi02g02561 . . . . . . . . . . . . . . Cma08g00518 . Car08g00430 . . . . . . . . . . Cla09g00367 Cam09g0397 Cec09g0401 Cco09g0384 Clacu09g0400 . Cre09g0382 . . Chy01g01852 Cme01g02457
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu02g0056 . 4 797 Antiporter Super Family AT2G13620 72.4 0.0e+00 1151.0
Clacu07g0753 . 47 821 Antiporter Super Family AT2G13620 50.4 3.9e-208 721.8
Clacu04g0882 . 78 848 Antiporter Super Family AT3G53720 68.9 3.2e-289 991.1
Clacu07g0763 . 83 779 Antiporter Super Family AT3G53720 50.6 4.8e-184 641.7
Clacu07g0761 . 86 771 Antiporter Super Family AT3G53720 50.1 1.7e-181 633.3
Clacu07g0753 . 119 818 Antiporter Super Family AT3G53720 50.3 2.2e-181 632.9
Clacu07g0763 . 1 779 Antiporter Super Family AT5G41610 70.0 1.0e-309 1059.3
Clacu07g0761 . 7 774 Antiporter Super Family AT5G41610 68.1 1.6e-299 1025.4
Clacu07g0753 . 37 821 Antiporter Super Family AT5G41610 66.7 1.9e-295 1011.9
Clacu07g0749 . 57 836 Antiporter Super Family AT5G41610 65.0 1.1e-287 986.1
Clacu04g0882 . 10 822 Antiporter Super Family AT5G41610 51.0 3.5e-209 725.3
Clacu07g0761 . 11 791 Antiporter Super Family AT4G23700 65.2 9.1e-290 993.0
Clacu07g0753 . 46 838 Antiporter Super Family AT4G23700 63.8 2.0e-284 975.3
Clacu07g0749 . 67 834 Antiporter Super Family AT4G23700 63.2 5.0e-280 960.7
Clacu07g0763 . 9 779 Antiporter Super Family AT4G23700 63.5 5.5e-279 957.2
Clacu07g0763 . 5 779 Antiporter Super Family AT3G17630 63.9 2.2e-272 935.3
Clacu07g0753 . 45 819 Antiporter Super Family AT3G17630 62.4 1.5e-268 922.5
Clacu07g0761 . 7 791 Antiporter Super Family AT3G17630 61.4 3.3e-268 921.4
Clacu07g0749 . 63 834 Antiporter Super Family AT3G17630 61.2 1.0e-261 899.8
Clacu04g0882 . 10 824 Antiporter Super Family AT3G17630 51.3 2.7e-206 715.7
Clacu07g0761 . 1 775 Antiporter Super Family AT1G64170 57.8 5.0e-240 827.8
Clacu07g0753 . 47 821 Antiporter Super Family AT1G64170 57.6 1.1e-239 826.6
Clacu07g0763 . 15 782 Antiporter Super Family AT1G64170 57.1 7.8e-233 803.9
Clacu07g0749 . 68 836 Antiporter Super Family AT1G64170 56.8 1.9e-231 799.3
Clacu02g0056 . 4 797 Antiporter Super Family AT2G13620 72.4 0.0e+00 1151.0
Clacu07g0753 . 47 821 Antiporter Super Family AT2G13620 50.4 3.9e-208 721.8
Clacu07g0761 . 1 775 Antiporter Super Family AT1G64170 57.8 5.0e-240 827.8
Clacu07g0753 . 47 821 Antiporter Super Family AT1G64170 57.6 1.1e-239 826.6
Clacu07g0763 . 15 782 Antiporter Super Family AT1G64170 57.1 7.8e-233 803.9
Clacu07g0749 . 68 836 Antiporter Super Family AT1G64170 56.8 1.9e-231 799.3
Clacu07g0761 . 11 791 Antiporter Super Family AT4G23700 65.2 9.1e-290 993.0
Clacu07g0753 . 46 838 Antiporter Super Family AT4G23700 63.8 2.0e-284 975.3
Clacu07g0749 . 67 834 Antiporter Super Family AT4G23700 63.2 5.0e-280 960.7
Clacu07g0763 . 9 779 Antiporter Super Family AT4G23700 63.5 5.5e-279 957.2
Clacu07g0763 . 1 779 Antiporter Super Family AT5G41610 70.0 1.0e-309 1059.3
Clacu07g0761 . 7 774 Antiporter Super Family AT5G41610 68.1 1.6e-299 1025.4
Clacu07g0753 . 37 821 Antiporter Super Family AT5G41610 66.7 1.9e-295 1011.9
Clacu07g0749 . 57 836 Antiporter Super Family AT5G41610 65.0 1.1e-287 986.1
Clacu04g0882 . 10 822 Antiporter Super Family AT5G41610 51.0 3.5e-209 725.3
Clacu07g0763 . 5 779 Antiporter Super Family AT3G17630 63.9 2.2e-272 935.3
Clacu07g0753 . 45 819 Antiporter Super Family AT3G17630 62.4 1.5e-268 922.5
Clacu07g0761 . 7 791 Antiporter Super Family AT3G17630 61.4 3.3e-268 921.4
Clacu07g0749 . 63 834 Antiporter Super Family AT3G17630 61.2 1.0e-261 899.8
Clacu04g0882 . 10 824 Antiporter Super Family AT3G17630 51.3 2.7e-206 715.7
Clacu04g0882 . 78 848 Antiporter Super Family AT3G53720 68.9 3.2e-289 991.1
Clacu07g0763 . 83 779 Antiporter Super Family AT3G53720 50.6 4.8e-184 641.7
Clacu07g0761 . 86 771 Antiporter Super Family AT3G53720 50.1 1.7e-181 633.3
Clacu07g0753 . 119 818 Antiporter Super Family AT3G53720 50.3 2.2e-181 632.9
Clacu09g0400 . 47 790 Antiporter Super Family AT3G52080 54.3 1.2e-233 806.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008009 0 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 34