Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g0418 ATGACAGACCCAAATTACTCAAATTCCTTCAACTTCATTCCTCTTCCTTCTTATCTTCCTCCTTCAAATTTCCCCTTTTCCCAATGCCGCCACCCTCTTCCTCCTCCTCCTCCTCCTCCTCCGCCGTCTTCGCCGCCGCAAGCCCTCCCTCTCCTCAACACCCTTTCGCCGGAAACCGCCGATCATCCCTCCTCCTCCACCACCACTTGCAGTTTCGATGACGAATCTGCCGCTCTTGCTCTTGACTTCAGCCTCTCTTGCCCTAGCTCCGATCTAGACTCCTCCTTTCATTCCTTCTCGCCGGACCCTGGCACCGGGAAAATCCTCGACGGTGACATATCCGACCACCCTTTGCCGATCTCCGGCAAGGGTCAGTTCTGGATTCCCACCCCATCTCAGATCCTCATCGGCCCTACTCAGTTCTCTTGCCCTCTTTGCTCTAAAGCCTTCAATAGATACAATAATCTTCAGATGCATATGTGGGGGCATGGATCGCAATACAGGAAAGGCCCAGAATCACTCAAAGGAACACAACCAACCGCAATGCTAAGGCTCCCATGCTATTGCTGCGCGGCTGGCTGCAAACACAACATCGACAACCCACGGTCGCGGCCGCTCAAGGATTTCCGCACCCTTCAAACGCATTACAAGCGCAAGCACGGAATCAAGCCCTTCACTTGTAGAAAATGCACCAAGGCCTTCGCTGTCAAAGGCGATTGGCGAACCCACGAGAAGAATTGCGGCAAGATTTGGTATTGCTTTTGTGGCTCTGACTTCAAACACAAACGCTCCCTTAAAGACCATATCAAGGCCTTTGGTCACGGCCATGGCGCCCTCGGTCTTGACTACTTTGATGACGACAATGAACCCTCTCCTGAACTCCAACTCCAACACCAATCACAACACGGCCTCTTCCTCCATCTTCATTAA 930 52.47 MTDPNYSNSFNFIPLPSYLPPSNFPFSQCRHPLPPPPPPPPPSSPPQALPLLNTLSPETADHPSSSTTTCSFDDESAALALDFSLSCPSSDLDSSFHSFSPDPGTGKILDGDISDHPLPISGKGQFWIPTPSQILIGPTQFSCPLCSKAFNRYNNLQMHMWGHGSQYRKGPESLKGTQPTAMLRLPCYCCAAGCKHNIDNPRSRPLKDFRTLQTHYKRKHGIKPFTCRKCTKAFAVKGDWRTHEKNCGKIWYCFCGSDFKHKRSLKDHIKAFGHGHGALGLDYFDDDNEPSPELQLQHQSQHGLFLHLH 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3713651 3716779 + ClG42_09g0041800.10 Clacu09g0418 256726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g0418 309 FunFam Zinc finger protein WIP2 194 276 - -
Clacu09g0418 309 MobiDBLite consensus disorder prediction 27 48 - -
Clacu09g0418 309 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 224 248 - -
Clacu09g0418 309 MobiDBLite consensus disorder prediction 26 69 - -
Clacu09g0418 309 MobiDBLite consensus disorder prediction 49 69 - -
Clacu09g0418 309 SMART c2h2final6 251 274 IPR013087 -
Clacu09g0418 309 SMART c2h2final6 225 245 IPR013087 -
Clacu09g0418 309 SMART c2h2final6 141 163 IPR013087 -
Clacu09g0418 309 PANTHER ZINC FINGER PROTEIN WIP2 122 299 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(InterPro)|GO:0010468(PANTHER)|GO:0048856(PANTHER)
Clacu09g0418 309 ProSitePatterns Zinc finger C2H2 type domain signature. 143 163 IPR013087 -
Clacu09g0418 309 SUPERFAMILY beta-beta-alpha zinc fingers 208 245 IPR036236 -
Clacu09g0418 309 ProSiteProfiles Zinc finger C2H2 type domain profile. 141 168 IPR013087 -
Clacu09g0418 309 SUPERFAMILY beta-beta-alpha zinc fingers 134 163 IPR036236 -
Clacu09g0418 309 Gene3D Classic Zinc Finger 203 276 - -
Clacu09g0418 309 Gene3D Classic Zinc Finger 140 163 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu09g0418 Clacu-Chr9:3713651 Clacu10g1710 Clacu-Chr10:30592900 7.60E-88 dispersed
Clacu02g2378 Clacu-Chr2:36800980 Clacu09g0418 Clacu-Chr9:3713651 5.60E-90 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48288 PF00096 zf-C2H2 0.0016 CL0361 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g0418 - - - 0.0