Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g0440 ATGGCGGAATCCCAGCATCGCGCTAAGCGCCCTAGAATTACGAGGGGGGAAGATGATTATATGCCTGGAAGTATTATTGAGATTGAGCTTCATAACTTTATGACCTTTAACCACTTGAAATGTAAACCAGGGTCACGTCTAAACCTTGTAATTGGGCCTAACGGATCTGGTAAAAGCTCTATTGTATGTGCTATTGCCCTTGGCCTTGGTGGTGAGCCTCAGCTCCTTGGAAGGGCAACCAGTGTTGGAGCATATGTGAAGCGTGGGGAGGAGTCTGGTTATGTTAGAATAACCTTGAGAGGGAATACTAAAGAGGAAAAGATTACAATTACACGTAAAATGGACATACATAACAAATCTGAGTGGTTGTTCAACGGAAAAGTTGTGCCAAAAAAAGATGTAGCTGGAATTATTCAAAGGTTTAACATTCAAGTTAATAATTTGACTCAATTTTTACCTCAGGACAGGGTTTGTGAGTTTGCCAAATTAACTCCTGTGCAACTTTTAGAAGAGACTGAAAAGGCAGTTGGTGATCCTCAACTTCCTATCCTACATCGTGCACTTGTTGATAAAAGCCATGGCATAAAAAGTATAGAAAGAGCTGTTGAGAAAAATGGTGACACCCTAGATCAGTTGAAGGCATTAAATGTCGAGCAAGAGAAAGATGTTGAGCGTGTTCGTCAAAGAGATGAACTTTTAAAAAAGGTTGAGTCCATGAAGAAGAAACTGCCATGGCTAAAGTATGACATGAAAAAGGCTGAATACATGGAAGTTAAGGAAAAGGAAAAGGAGGCCCAAAAAAAGTTAGATGAAGCTGCTAACACTTTGAATGAACTAAAGGAGCCAATTGAGAAACAAAAAATGGAGAAGGCAAAGTTGGATGCTAAAACTAAAAAGTATAGCACTCTTATTAATGGTAATCACAAGAAAAGGATGGAACTTCAGGAAACTGAAAACCATTTGGGGGTGCAAGTGCAAGGAAAATTGAAAGAAATGGAAGACTTGAGGAAACAAGAAGAATCTCGTCAACAGAGAATCTTGCGAGCTAAAGAGGAACTTGAAGCTGCTGAATTCGAACTTCAGAATTTGCCTCCTTATGAACATCCCAAGGATGAGATTGAACGGTTGCGTGCTCAAATTTTGGAGCTGGAAGTTTCTGCAAGTCAGAAGAGACTTATGAAGTCAGAGATTGAGAAAAATATTTCCCAAAAAAGAAATACTTTGAGGCAATGCTTGGATAGGTTAAAGGATATGGAGAATACTAATACAAAACTACTACAGGCATTGAGAAATTCTGGAACAGAGAAGATTTTTGAAGCTTATCACTGGCTTCAAGAACATCGCCATGAGTTCAAGAAGGAGGTGTATGGTCCAGTGTTGCTAGAGGTTAATGTGTCAAATCGGATTCATGCTGACTACTTAGAAGGTCATATTCCATCCTATGTCTGGAAGTCCTTCATAACCCAAGATTCTGATGATCGTGACATTATGGTAAAAAATTTGGGCTCATTCGGTGTTCCTGTCTTAAACTATGTGGGAGGTGAAAGGCGCACAAATCAGCATTTTGAGTTGTCTGAAGAGGTTCGTGCATTTGGCATATATTCTCGGCTAGACCAAATTTTTGAGGCTCCTGCAGCTGTAAAGGAGGTTTTGACCATGCAGTTTGGTTTGGAACATTCATTTATTGGTTCAAAGGTAACTGATCAAAAGGCAGACGAGGTCTCAAAATTGGGAATTTTAGATTTTTGGACTCCAGATAATCATTATCGATGGTCTCGCTCTAGATACGGTGGTCATATGTCCGGAAGTGTGGAACCAGTTGATCGCTCACGTCTTCTTTTGTGCAACTTGGATGCGGGAGAAATTGATGGGCTTCGCTCCAGGAAAAATGAGCTAGAAGAATCTGTTTCTGCCTTAGAAGAAAATTGTAAATCATGTCAGAATGAGCTAAGATTGATAGAGGATGAAGAAGCTAAACTTCGCAAACATCGGGATGACATTTTAAATACTGTGCAACATGAGAAGAGAAAACGACGTGAAATGGAAAATCGCATTGATCAAAGGAAAAAGAAATTAGAATCTATGGAGCGGGAAGATGACCTGGATACTGTTGTGGCCAAGCTTGTCGACCAAGCTGCAAATTTTAACATTCAAAGGTTCCATTGTGTAATTGAAATTAAGCATTTGCTTCTTGAAGCCGTTTCCTATAGACAGAGCTTGACTAAGAACCACATGGCCTCCATTGAAATTGAAGCAAAGATCAGAGAATTGGAGGTAAATCTGAAGCAGCATGAAAAGGTTGCTCTGCAAGCGTCAGTGCAGTTTGAGTACTGCAAGAAGGAAGTTGAGGACTATCGACAGCAACTTTCAGCTGCCAAGAAGTTTGCAGAATCTATTGCTGAGATCACACCTGACCTTGAGAAGGAATTTCTTGAGATGCCCACTACAATTGAGGAATTGGAGGCCGCTATTCAAGATAATGTTTCTCAAGCTAATTCCATTCTATTCTTAAACCATAACGTGCTTGAGGAATACGAACATCGTCAGAATCAGATAAACACCATTGCACGGAAACTAGAAGCTGATAAACATGAACTAAGGAAGTGTATGGCTGAAGTTGAAGAGCTGAAGGCAAATTGGCTCCCAACATTAAGAAGACTTGTTTCTCAGATAAATGAAAGTTTTAGTCGCAATTTTCAAGAGATGGCTGTTGCTGGAGAAGTGTTATTGGATGAACACGATATGGACTTTGATCAATTTGGAATATTAATTAAAGTGAAGTTCAGACAAGCAGGTCAGCTTCAGGTTCTCAGTGCACATCATCAATCTGGAGGGGAACGCTCAGTGTCGACAATTCTGTATCTTGTTTCCCTTCAAGACCTTACCAACTGCCCATTTAGAGTAGTTGACGAGATAAACCAAGGAATGGATCCCATAAATGAACGGAAGATGTTCCAGCAATTGGTGAGAGCTGCCAGCCAAACCAATACCCCACAGTGTTTCCTACTGACTCCAAAGTTACTTCCAGAACTGGAATATAGTGAGGCCTGTAGTATACTGAATATAATGAATGGTCCTTGGATCGAGCAGCCCTCAAGAGCATGGAGCCATGGAGATAGCTGGGGAACGTTGATGAACTATGTAGGAGAAAGCCGATGTTGA 3162 40.58 MAESQHRAKRPRITRGEDDYMPGSIIEIELHNFMTFNHLKCKPGSRLNLVIGPNGSGKSSIVCAIALGLGGEPQLLGRATSVGAYVKRGEESGYVRITLRGNTKEEKITITRKMDIHNKSEWLFNGKVVPKKDVAGIIQRFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQLPILHRALVDKSHGIKSIERAVEKNGDTLDQLKALNVEQEKDVERVRQRDELLKKVESMKKKLPWLKYDMKKAEYMEVKEKEKEAQKKLDEAANTLNELKEPIEKQKMEKAKLDAKTKKYSTLINGNHKKRMELQETENHLGVQVQGKLKEMEDLRKQEESRQQRILRAKEELEAAEFELQNLPPYEHPKDEIERLRAQILELEVSASQKRLMKSEIEKNISQKRNTLRQCLDRLKDMENTNTKLLQALRNSGTEKIFEAYHWLQEHRHEFKKEVYGPVLLEVNVSNRIHADYLEGHIPSYVWKSFITQDSDDRDIMVKNLGSFGVPVLNYVGGERRTNQHFELSEEVRAFGIYSRLDQIFEAPAAVKEVLTMQFGLEHSFIGSKVTDQKADEVSKLGILDFWTPDNHYRWSRSRYGGHMSGSVEPVDRSRLLLCNLDAGEIDGLRSRKNELEESVSALEENCKSCQNELRLIEDEEAKLRKHRDDILNTVQHEKRKRREMENRIDQRKKKLESMEREDDLDTVVAKLVDQAANFNIQRFHCVIEIKHLLLEAVSYRQSLTKNHMASIEIEAKIRELEVNLKQHEKVALQASVQFEYCKKEVEDYRQQLSAAKKFAESIAEITPDLEKEFLEMPTTIEELEAAIQDNVSQANSILFLNHNVLEEYEHRQNQINTIARKLEADKHELRKCMAEVEELKANWLPTLRRLVSQINESFSRNFQEMAVAGEVLLDEHDMDFDQFGILIKVKFRQAGQLQVLSAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQTNTPQCFLLTPKLLPELEYSEACSILNIMNGPWIEQPSRAWSHGDSWGTLMNYVGESRC 1053
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3823559 3843493 + ClG42_09g0044000.10 Clacu09g0440 256748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g0440 1053 Coils Coil 248 289 - -
Clacu09g0440 1053 FunFam Structural maintenance of chromosomes 5 849 1020 - -
Clacu09g0440 1053 Coils Coil 842 879 - -
Clacu09g0440 1053 Coils Coil 622 698 - -
Clacu09g0440 1053 Coils Coil 747 774 - -
Clacu09g0440 1053 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 1 1045 IPR027131 GO:0000724(InterPro)|GO:0000724(PANTHER)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006281(InterPro)|GO:0016887(InterPro)|GO:0030915(InterPro)|GO:0030915(PANTHER)
Clacu09g0440 1053 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 994 IPR027417 -
Clacu09g0440 1053 Pfam RecF/RecN/SMC N terminal domain 25 992 IPR003395 -
Clacu09g0440 1053 Coils Coil 209 229 - -
Clacu09g0440 1053 Coils Coil 329 356 - -
Clacu09g0440 1053 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 293 IPR027417 -
Clacu09g0440 1053 Coils Coil 401 428 - -
Clacu09g0440 1053 Gene3D - 847 1022 IPR027417 -
Clacu09g0440 1053 Gene3D - 24 213 IPR027417 -
Clacu09g0440 1053 Gene3D - 585 707 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g1680 Clacu-Chr7:31543513 Clacu09g0440 Clacu-Chr9:3823559 6.90E-19 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g0440 K22803 - csv:101210248 1995.32