Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g0462 ATGGGATGCTTTGGTTGCTGCGAAGAAGATGGTATCCAGAAGCCTGCTGATAACAGCAGCATGTACCAAGTAAAAGCTTCAGCAGGAACTGATGAAGGCTATCACAAACGGCAAACTGCACCTAAAAGTCCTCCAATAGTGAAAATGCGGCCCATTGAAGTCCCTGCCATATCATTTGAGGAACTGAAGGAGGTTACGAAAAATTTCGATGCTGACTGTTTGATTGGAGAGGGTTCCTACGGTAGAGTATACTATGGGGTATTTACAAGTGGGCAGACTGTGGGAATCAAAAAGTTGGATGCCAGCAAACAATCGGATGATGAATTCTTATCCCAGGTCTCCATGGTTTCAAGACTAAAGCACCATAATTTTCTAAACTTGATTGGGTACTGTGTTGATGGCAATTCTCGAATTCTTGCATATGAGTATGCTTCAAATGGATCTCTTCACGACATTTTACACGGGAGGAAAGGAGTCAAAGGAGCACAACCCGGCCCTGTTCTTTCCTGGGCACAGAGAGTAAAAATTGCTGTAGGTGCTGCAAAGGGTTTGGAGTATTTGCATGAAAAGGTCGATCCTCATATCATCCATCGGGACATAAAATCCAGCAACGTACTAATATTTGATGATGATTTGGCGAAAATTGCTGACTTTGATTTGTCAAACCAAGCCCCTGATATGGCTGCACGGCTTCATTCCACCCGTGTTCTTGGAACCTTTGGCTATCATGCTCCTGAATACGCAATGACTGGACAATTGAATGCCAAGAGTGATGTGTACAGCTTTGGTGTTGTCCTGCTTGAACTTTTGACAGGAAGAAAGCCAGTTGATCATACATTGCCTCGAGGACAGCAAAGCCTCGTGACATGGGCCACGCCCAAACTTTGCGAGGATAAAGTTAAGCAATGTGTTGATGCAAAACTAGGAGATGAGTACCCTCCAAAGTCAGTTGCAAAGTTTGCAGCGGTTGCTGCATTGTGCGTTCAATATGAAGCAGATTTCAGACCAAACATGAGTATTGTGGTCAAAGCCCTGCAGCCTCTGTTAAATGTCCGACCTGGTCCTGGCGGTGAAGCACCAACTCTTTAA 1089 44.72 MGCFGCCEEDGIQKPADNSSMYQVKASAGTDEGYHKRQTAPKSPPIVKMRPIEVPAISFEELKEVTKNFDADCLIGEGSYGRVYYGVFTSGQTVGIKKLDASKQSDDEFLSQVSMVSRLKHHNFLNLIGYCVDGNSRILAYEYASNGSLHDILHGRKGVKGAQPGPVLSWAQRVKIAVGAAKGLEYLHEKVDPHIIHRDIKSSNVLIFDDDLAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPKLCEDKVKQCVDAKLGDEYPPKSVAKFAAVAALCVQYEADFRPNMSIVVKALQPLLNVRPGPGGEAPTL 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4033344 4037315 - ClG42_09g0046200.10 Clacu09g0462 256770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g0462 362 SUPERFAMILY Protein kinase-like (PK-like) 44 345 IPR011009 -
Clacu09g0462 362 Pfam Protein tyrosine and serine/threonine kinase 74 345 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu09g0462 362 FunFam pto-interacting protein 1 145 356 - -
Clacu09g0462 362 Gene3D Transferase(Phosphotransferase) domain 1 144 352 - -
Clacu09g0462 362 Gene3D Phosphorylase Kinase; domain 1 31 143 - -
Clacu09g0462 362 SMART serkin_6 69 349 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g0462 362 CDD STKc_IRAK 75 348 - -
Clacu09g0462 362 ProSiteProfiles Protein kinase domain profile. 69 349 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g0462 362 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 3 350 IPR052101 -
Clacu09g0462 362 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu09g0462 Clacu-Chr9:4033344 Clacu10g1148 Clacu-Chr10:24024521 1.00E-75 dispersed
Clacu07g1597 Clacu-Chr7:30578692 Clacu09g0462 Clacu-Chr9:4033344 1.30E-136 transposed
Clacu08g0594 Clacu-Chr8:13077509 Clacu09g0462 Clacu-Chr9:4033344 2.00E-136 transposed
Clacu10g1751 Clacu-Chr10:31044514 Clacu09g0462 Clacu-Chr9:4033344 1.10E-133 transposed
Clacu10g1182 Clacu-Chr10:24551980 Clacu09g0462 Clacu-Chr9:4033344 7.80E-169 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73810 PF07714 PK_Tyr_Ser-Thr 1.40E-44 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g0462 K13436 - csv:101215263 692.189