Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g0465 ATGGACGATAGCTGTGCTGTGTGTGCCGAGACTCTTGAATGGGTTGCCTATGGGTCTTGCGGCCATCGGGATGTCTGCTCCACCTGCGTTGCTCGTCTTCGATTCATTTGTGGTGATCGCCGTTGTTGCATCTGCAAGTCTGAATCCGCCGTCGTGTTCGTCTCTAAGGCCTTGGGAGATTATACAAGGACAATTAACGACTTCACAGTCTTTCCTTCTGAACCAAGAGAGGGTCGTAGTGGATCCTATTGGTATCATGAAGATACACAAGCATTTTTCGATGATGTTGATCACTACAAGATGATAAAAGCAATGTGCAGGTTGTCATGCAGTGTGTGTGATAAGATTGGTGAAGATCAACCAAATGATGCCTCAAAACGCCGAGGAAGGTTTCGGAATATTGAGCAGCTAAAGGGTCATTTGTTTCATCGACATAAGTTGTTTATGTGCAGCCTTTGTTTGGAAGGCAGGAAGGTTTTTATTTGTGAACAAAAGCTATATAATAGAGCACAATTGAATCAGCATATACACACGGGTGACTCTGAGGTCGATGGAAGTGAGAGTGAGAGAGGTGGTTTCACCGGGCATCCTATGTGTGAATTTTGCAGAACTCCATTTTATGGAGATAATGAGCTGTATACTCATATGTCAACTGAGCATTATACATGTCATATATGCCAAAGGCTCCATCCTGGACAGTACGAATACTATAAGAATTATGATGACCTAGAGATCCATTTTCGACAAGGACATTTTCTTTGTGAAGATGAAGCCTGCCTTGCTAAAAAGTTTATAGTGTTCCAATCTGAAGCGGAAATGAAGAGGCATAATACTATTGAACATGGTGGCAAGCTATCTCGATCAAAGCGAAATGCTGCTTTGCAGATACCAACCAGTTTTCGATATCGAAGAAGTAATGAGCAAGATAATCGCCGTGGTAGACGCACATTTCGTCGCGATTCTTCTGAAGATCTACTTTCTTTGGCCATTCAAGAAAGTTTTGAAACAGCTAATGTTGATGACACCAATCATGACCCATTACCTAGCGGACAAGTAGCCTCAGATCAGGAAAATATAAGCAACATTGATCCCTTGATTGAACCATTTGAAGCATTGGCAACAGCAGATCCTGAATCAGCTTCTAGATACCTTCAAGCCTTGGGCCATTCTAGGAATTCCCAATTGGAGCAATCGTCCTTTCCTCCCCTTTCAACAGCATCTAGCAGTAGCCATCCAAAGCCCAGTCAGGACAAAGACATTCTACATAATAACAGTATGGCAGCTCATCTTCGCCGCCAGAGGAACGTGACTGTTCTGAATTCTGCAGGTTGGCCAAAATCAAGTCGTGCCCCTGTGGTACCACTAAATAGCTCATCTCAAGCTTGGCCTGCAATAAACGCCAATCATGCAGCATCGAGCAGTTCTGGGCAGACTAAGGGTGTCGTAACCATTAATAATGGCCCTTCAGTCTCTGCTTACTCAAATGCTGCTCAGATGCATGCAAAGGCTCGATCTAGTTCTTCAAGTGGATCAGGTAGTAGCAGTAGGATCAGCCACTCTGCTTCCGCTCCCAGTCTCACTGACATTGCCTATACTGAACCCTCAGTTAATGAATTCCCTCCAGTATCTGCAGCACAGGCACGGAAGGCGCCCTCAAGTAGCCAGAGTTCAATGAACATGGAAGATGTGCAGACAGCAAACAAATCTCTAGTTGAAAAGATCCGTGCTGCACTTGATTTTGATCAAGATAGATATGCCATTTTTAAAGATATATCTGCACAATATCGTCAGGGTCAGATTGACACGGAAATGTATCTAGACTGTGTGCAACAGTTCGGTTTGTCACATCTTCTGCTTGAGTTGGCTAGGCTCTGTCCTGATCCTCAGAAACAGAGAGAACTTGTGGAGACCTATAATGCTAGTTTTCATAAAGATGTGATCCCAGAAAATGGTAGGGCTCTAGATGGTATTCAAATTAAAGACAAAAGTAAGGGAAAGAAAGGTAAAGGGAAGTCTATGGAGGTTAAAGAGAGCAGTTCCAAGGACAAGTTAGCAGATAGTATCTTGAGCAGTGTTCGGGAATTGCAGTCGAGTTTCAGGCCATCCGAGGAAAATGTAGAGGTATTATTGAAGGGCGAGTACCGTGCTTCAAAAGGGAAACTGAAGATATCATCTGATGACCAGCAAGGTGGGATAGGAGGACAAAACAGTCAACCGTCTACCGGTCTATCGAACCAAAGCACTGGGGATGGGGGTGGTGGGGGGAGCAAACAAAAAAAGAAAACCTCCAAGTTCCATAGAGTTCGTTTAGGCGATGGTTCAGTTGCTGCACTCTTAGATTTAAAAAACAACAATCTAGCTTTAGACCCAGAACCAGTCGAAAGAGTAGAGGACAGGAACAATGCTGCAGCAGGGGCATTGCCTGTTCGGGGCGTTTGGCGAAATGGTGCTCAAAGGCTTTTCTCCTAG 2469 44.35 MDDSCAVCAETLEWVAYGSCGHRDVCSTCVARLRFICGDRRCCICKSESAVVFVSKALGDYTRTINDFTVFPSEPREGRSGSYWYHEDTQAFFDDVDHYKMIKAMCRLSCSVCDKIGEDQPNDASKRRGRFRNIEQLKGHLFHRHKLFMCSLCLEGRKVFICEQKLYNRAQLNQHIHTGDSEVDGSESERGGFTGHPMCEFCRTPFYGDNELYTHMSTEHYTCHICQRLHPGQYEYYKNYDDLEIHFRQGHFLCEDEACLAKKFIVFQSEAEMKRHNTIEHGGKLSRSKRNAALQIPTSFRYRRSNEQDNRRGRRTFRRDSSEDLLSLAIQESFETANVDDTNHDPLPSGQVASDQENISNIDPLIEPFEALATADPESASRYLQALGHSRNSQLEQSSFPPLSTASSSSHPKPSQDKDILHNNSMAAHLRRQRNVTVLNSAGWPKSSRAPVVPLNSSSQAWPAINANHAASSSSGQTKGVVTINNGPSVSAYSNAAQMHAKARSSSSSGSGSSSRISHSASAPSLTDIAYTEPSVNEFPPVSAAQARKAPSSSQSSMNMEDVQTANKSLVEKIRAALDFDQDRYAIFKDISAQYRQGQIDTEMYLDCVQQFGLSHLLLELARLCPDPQKQRELVETYNASFHKDVIPENGRALDGIQIKDKSKGKKGKGKSMEVKESSSKDKLADSILSSVRELQSSFRPSEENVEVLLKGEYRASKGKLKISSDDQQGGIGGQNSQPSTGLSNQSTGDGGGGGSKQKKKTSKFHRVRLGDGSVAALLDLKNNNLALDPEPVERVEDRNNAAAGALPVRGVWRNGAQRLFS 822
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4063724 4069163 - ClG42_09g0046500.10 Clacu09g0465 256773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g0465 822 ProSiteProfiles Zinc finger RING-type profile. 5 46 IPR001841 -
Clacu09g0465 822 CDD RING-HC_ZNF598 3 53 IPR041888 -
Clacu09g0465 822 MobiDBLite consensus disorder prediction 655 682 - -
Clacu09g0465 822 SMART c2h2final6 108 145 IPR013087 -
Clacu09g0465 822 SMART c2h2final6 221 251 IPR013087 -
Clacu09g0465 822 SMART c2h2final6 197 220 IPR013087 -
Clacu09g0465 822 SMART c2h2final6 252 281 IPR013087 -
Clacu09g0465 822 MobiDBLite consensus disorder prediction 728 753 - -
Clacu09g0465 822 PANTHER ZINC FINGER PROTEIN 598 1 816 IPR044288 GO:0016567(PANTHER)|GO:0043022(PANTHER)|GO:0061630(InterPro)|GO:0061630(PANTHER)|GO:0072344(PANTHER)|GO:0072344(InterPro)
Clacu09g0465 822 MobiDBLite consensus disorder prediction 495 520 - -
Clacu09g0465 822 MobiDBLite consensus disorder prediction 390 420 - -
Clacu09g0465 822 MobiDBLite consensus disorder prediction 720 767 - -
Clacu09g0465 822 MobiDBLite consensus disorder prediction 653 682 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g0465 K22381 - csv:101214376 1432.54