Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g0481 ATGGTGGCTGAAGCTGAGGTTGTTGTTTGTTCGAAGAGCCTCCCGGTTTTGGAGGTCCCGTATTTCGGTAAAGAGACTCATCTTGTGGATGAAATTGAGTCCATCGATGGTGGGATTTCGGTTGATCCGACTCTCAATCGTGTTCGTGCTTCCGAATCTGTTTGTTCCAGTTCTCAATCGGATATTAAACCCATGAAGAAAATTCCAGATTCCGACGTCGATACGGAGAACGGAAGGGAATTTCCGAGCCTCCGGTCGGGGAGCTTTGCTGATATTGGCCCTAGGAGATACATGGAAGATGAACATATACGGATAGATGATTTGTCTTCACATTTAGGATCGCTCTTTAAGTTTCCCAAGCCAAGTGCTTTCTATGGGGTATTCGATGGACATGGAGGTCCTGAAGCAGCAGCTTATATCAGAAAGAACGTTCTTAGACTCTTTTTTGAGGATGTTAGTTTTCCTCAAATTCCAGATATTGGTGAAGTCTTGCCGGAGGAGATAGAAAATTGTCTCCGAAAAGCATTTCTTCTAGCTGATCGAGCTCTGGCTGATGATTCCAGTGTCAGTAGTTCATCCGGGACAACGGCCCTGACAGCTCTTGTGCTTGGAAGGCATTTAATGGTGGCAAATGCTGGAGATTGCCGAGCTGTTCTCAGCCGGAATGGGGAGGCAGTAGATATGTCTCAAGACCACCGGCCAGTTTATTCTCCAGAGAAGCAACGGGTAGAAGAGTTGGGTGGCTTTGTTGATGGTGGCTATCTCAACGGGGTTTTATCGGTTTCCAGGGCTTTGGGGGATTGGGACATGAAGCTCCCTGATGGTTCTCCTTCGCCTCTCATTGCAGAACCAGAATGCAGGCAGGTGGTGCTTACAGAAGAGGATGAGTTCTTGATCATAGCCTGTGATGGGATTTGGGACGTGATGTCGAGCCAACAAGCAGTCAATGTAGTTCGACAGGGGCTTCAACGTCACGATGACCCTGAGCGGTGTGCTCGAGACCTTGTCCTTCAGGCTTTGCGACTAGACTCATTCGACAACCTCACTGTTGTTGTTGTTTGCTTCTCCAGTTTCCATCCTGGCAATTCTCCACGACCACAGCAGCGGAACTTAAGATACTGCAGTCTCTCTGCACAGGCTCTTTGTAGCTTGCAAAGATGGCTGGATAACAGTGGATGCCAATGA 1185 48.19 MVAEAEVVVCSKSLPVLEVPYFGKETHLVDEIESIDGGISVDPTLNRVRASESVCSSSQSDIKPMKKIPDSDVDTENGREFPSLRSGSFADIGPRRYMEDEHIRIDDLSSHLGSLFKFPKPSAFYGVFDGHGGPEAAAYIRKNVLRLFFEDVSFPQIPDIGEVLPEEIENCLRKAFLLADRALADDSSVSSSSGTTALTALVLGRHLMVANAGDCRAVLSRNGEAVDMSQDHRPVYSPEKQRVEELGGFVDGGYLNGVLSVSRALGDWDMKLPDGSPSPLIAEPECRQVVLTEEDEFLIIACDGIWDVMSSQQAVNVVRQGLQRHDDPERCARDLVLQALRLDSFDNLTVVVVCFSSFHPGNSPRPQQRNLRYCSLSAQALCSLQRWLDNSGCQ 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4141035 4142739 - ClG42_09g0048100.10 Clacu09g0481 256789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g0481 394 Gene3D - 65 359 IPR036457 -
Clacu09g0481 394 CDD PP2Cc 85 355 IPR001932 -
Clacu09g0481 394 ProSiteProfiles PPM-type phosphatase domain profile. 85 355 IPR001932 -
Clacu09g0481 394 SMART PP2C_4 75 353 IPR001932 -
Clacu09g0481 394 MobiDBLite consensus disorder prediction 59 79 - -
Clacu09g0481 394 MobiDBLite consensus disorder prediction 65 79 - -
Clacu09g0481 394 PANTHER PROTEIN PHOSPHATASE 2C 67 355 IPR015655 GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0006470(PANTHER)
Clacu09g0481 394 Pfam Protein phosphatase 2C 95 347 IPR001932 -
Clacu09g0481 394 ProSitePatterns PPM-type phosphatase domain signature. 124 132 IPR000222 GO:0043169(InterPro)
Clacu09g0481 394 FunFam Probable protein phosphatase 2C 22 70 358 - -
Clacu09g0481 394 SMART PP2C_SIG_2 100 355 IPR001932 -
Clacu09g0481 394 SUPERFAMILY PP2C-like 80 357 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1773 Clacu-Chr5:26860648 Clacu09g0481 Clacu-Chr9:4141035 3.50E-35 dispersed
Clacu09g0339 Clacu-Chr9:2882172 Clacu09g0481 Clacu-Chr9:4141035 3.10E-33 dispersed
Clacu09g0481 Clacu-Chr9:4141035 Clacu11g1596 Clacu-Chr11:27124233 4.70E-34 dispersed
Clacu02g1758 Clacu-Chr2:31141035 Clacu09g0481 Clacu-Chr9:4141035 5.50E-72 transposed
Clacu10g1623 Clacu-Chr10:29581419 Clacu09g0481 Clacu-Chr9:4141035 6.40E-30 transposed
Clacu11g2066 Clacu-Chr11:31577997 Clacu09g0481 Clacu-Chr9:4141035 1.80E-89 transposed
Clacu06g0411 Clacu-Chr6:4916388 Clacu09g0481 Clacu-Chr9:4141035 2.40E-104 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g0481 K14803 - csv:101216626 713.761