Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g0546 ATGGCGACGAGGAATCGAACTGCACAGTTTAAAAGGCACAGGGACGCCGTGAAGAGCGTCCGTGCACCTTTATCTTCTTCGGCAGCTGGTTCGAGCGGGCCGGTTATTGAGATGGTGAGTTCGTCTCTTCTTCGTTCAAAGCGTTCTTCTTCGTATGCTCCTCTTAGCACTGAAGATCCAGGACCTTCGAGCAGTGATGCATTTATGGTGGGTCTACCTCCAGCTTGGGTGGATGATTCCGAAGAAATAACTGTTAATATACAGAAAATTCGTAGGAAAATGGCAGAGTTAGTCAAAGCTCATTCTAAAGCTTTAATGCCTTCTTTTGCTGATGGCAAAGAAGATGAGCATACGATTGAGGCACTTACACTAGAGATTACCAATCTTTTGAAAACTTCCGAGAAGAGGTTGAAGAAAATTTCTAGTAATGGGTCCTCAGAGGATATTAACATCAGAAGAAATGTCCAGCGTTCTCTTGCTACAGAGCTTCAGAATCTTTCGATGGACCTTCGTAGAAGACAGTCAATGTATCTGAAACGTCTGCAGCAGCAAAAGGAGGGACACGATGGAATTGATTTGGAGATAAATTTGAATGGAAACAGAACTCTCCAGGAGGATGATGGATATGATGAATTTGGAGCCAATGAAAACCAAACGATGACATTAGATGGGCAGCACATTCAGGGAAGGGAGAAAGAGATTAAACAGGTTGTGAAATCGGTAAATGAGCTCGCCCAAATTATGAAGGATCTCTCAACCCTTGTTATAGACCAGGGTACCATTGTCGATAGAATTGACCACAATATTCAGAATGTTGCTGCTTCAGTTGAAGAGGGCTTTAAACAGCTTCAGAAGGCAGAGAAGAGTCAGAAGGATGGAGGAATGGTGAAATGTGCAACAGTGCTTGTTATTATGTGTTTCATAATGTTGGTTCTGTTGATACTGAAGGAGATAATTATGTAA 963 42.58 MATRNRTAQFKRHRDAVKSVRAPLSSSAAGSSGPVIEMVSSSLLRSKRSSSYAPLSTEDPGPSSSDAFMVGLPPAWVDDSEEITVNIQKIRRKMAELVKAHSKALMPSFADGKEDEHTIEALTLEITNLLKTSEKRLKKISSNGSSEDINIRRNVQRSLATELQNLSMDLRRRQSMYLKRLQQQKEGHDGIDLEINLNGNRTLQEDDGYDEFGANENQTMTLDGQHIQGREKEIKQVVKSVNELAQIMKDLSTLVIDQGTIVDRIDHNIQNVAASVEEGFKQLQKAEKSQKDGGMVKCATVLVIMCFIMLVLLILKEIIM 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4665276 4669099 - ClG42_09g0054600.10 Clacu09g0546 256854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g0546 320 Pfam SNARE domain 260 312 IPR000727 -
Clacu09g0546 320 SUPERFAMILY t-snare proteins 72 279 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Clacu09g0546 320 CDD SNARE_syntaxin16 227 285 - -
Clacu09g0546 320 MobiDBLite consensus disorder prediction 1 33 - -
Clacu09g0546 320 ProSitePatterns Syntaxin / epimorphin family signature. 230 269 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Clacu09g0546 320 PANTHER SYNTAXIN 83 306 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Clacu09g0546 320 FunFam Syntaxin-43 73 278 - -
Clacu09g0546 320 SMART tSNARE_6 218 286 IPR000727 -
Clacu09g0546 320 Gene3D - 73 278 - -
Clacu09g0546 320 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 224 286 IPR000727 -
Clacu09g0546 320 SMART SynN_4 67 182 IPR006011 GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1560 Clacu-Chr2:28976104 Clacu09g0546 Clacu-Chr9:4665276 2.30E-104 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g0546 K08489 - csv:101204192 581.252