Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g0554 ATGGCTGCCAGAACAACCACCGCCGCCGCCTTCTACTTTCTCATCCTCATTTCCCTTTACATTTCCACTTCCGCCGCCCCCACCGGTTCAGTATGCAGCTCGACTCGAGACCCATCCTACTGCAAATCGGTTCTCCCGAATCAAACCGGCAATGTCTACTCGTACGGACGGTCGTCGTTCAGAAAGTCACTGTCGTCGTCGCAGAAATTCCTCCGGCTGGTGGAGAAATACCTCAGGTCCCGATCGTCGCTGACAGTGCCGGCGGTGAGGGCGCTGGAGGACTGCCAGCTGCTGGCGGGACTGAACATTGATTACTTAACGACGTCGTTCCGGGCGGTGAACTCGACGAGCAGAACGTTGCCGGAGATGAAGGCGGACGACGTGCAGAGTCTGCTGAGTGCGATATTGACGAATCAACAGACTTGTTTGGATGGAATTAAGGCGACGGCGGGTTCTTGGTCGCTCAAAAATGGCCTTTCTCTCCCACTTGCTGCTGACACCAAGCTCTACTCTCTGTCCTTGGCCTTCTTTACCAAAGGTTGGGTTCCAAAGAAGAAGAAAAAACCGACATGGAAAGCCGCCGGAAGACAAGGGGGGTTCAGAAATGGGCGAATGTCACTCAAAATGTCCAGCCGAACCAAAGCGATCTACGAGACGGCGACCCGCCGGAATCTGTTGCAGATCGATGACGGCGGCGACGACCAGATTGCGGTCAGGGACATCGTCGTTGTCAGTCAAGACGGCAGCGGAAATTTCACCACCATCAATGAGGCGATTGCGGCGGCGCCGAACAACTCTGCTCCGTCCGACGGGTATTTCTTAATCTTCGTGTCGGCCGGAATTTATGAAGAATATGTGTCGATTGCGAAGAACAAGAGGTACTTGATGATGATCGGAGATGGCATTAATCAGACCGTCGTCACCGGTAATCGGAGTGTCGTTGACGGCTGGACCACCTTCAATTCCGCCACGTTTGCGGTGGTCGGACCTGGATTCGTAGCAGTAAACATGACATTCAGAAACACCGCCGGCGCCATAAAGCATCAAGCCGTAGCCGTCCGGAATGGCGCCGACTTATCAACATTCTACCTCTGCAGCTTCGAAGCCTACCAAGACACCTTATACACCCATTCCCTCCGCCAATTCTACCGCGACTGCGACATCTACGGCACCGTCGACTTCATCTTCGGCAACGCCGCCGTCGTCTTCCAGAACTGCAACATTTACCCACGCCTCCCGATGTCCAACCAGTTCAACGCCATCACCGCCCAGGGTCGGACCGACCCAAATCAGAACACCGGCACCTCCATCTACAACTGCCGAATCACGGCAGCCGACGATCTGGCCAACAACAGCGGCGCCGGCGTCAAGACGTTCCTAGGGCGGCCGTGGAAGGAATACTCAAGGACGGTTTATATGCAGAGCTTTATGGATGATTTGATTGATCCGGAGGGATGGAGGGCTTGGAATGGGGATTTTGCTTTGAACACTTCGTATTATGCTGAATTTGGGAATTTTGGGCCGGGATCTAACACATCGGAGAGGGTTAATTGGCCGGGATTTCATTTGATTAATGATACCGATGCTGGCAATTTCACGGCGGGGAATTTTGTGTTGGCCGACGATTGGCTGCCGCAGACCGGCGTTCCCTATACCAGCGGCCTCACGGACTAG 1674 54.36 MAARTTTAAAFYFLILISLYISTSAAPTGSVCSSTRDPSYCKSVLPNQTGNVYSYGRSSFRKSLSSSQKFLRLVEKYLRSRSSLTVPAVRALEDCQLLAGLNIDYLTTSFRAVNSTSRTLPEMKADDVQSLLSAILTNQQTCLDGIKATAGSWSLKNGLSLPLAADTKLYSLSLAFFTKGWVPKKKKKPTWKAAGRQGGFRNGRMSLKMSSRTKAIYETATRRNLLQIDDGGDDQIAVRDIVVVSQDGSGNFTTINEAIAAAPNNSAPSDGYFLIFVSAGIYEEYVSIAKNKRYLMMIGDGINQTVVTGNRSVVDGWTTFNSATFAVVGPGFVAVNMTFRNTAGAIKHQAVAVRNGADLSTFYLCSFEAYQDTLYTHSLRQFYRDCDIYGTVDFIFGNAAVVFQNCNIYPRLPMSNQFNAITAQGRTDPNQNTGTSIYNCRITAADDLANNSGAGVKTFLGRPWKEYSRTVYMQSFMDDLIDPEGWRAWNGDFALNTSYYAEFGNFGPGSNTSERVNWPGFHLINDTDAGNFTAGNFVLADDWLPQTGVPYTSGLTD 557
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4716330 4720031 - ClG42_09g0055400.10 Clacu09g0554 256862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g0554 557 Pfam Plant invertase/pectin methylesterase inhibitor 30 175 IPR006501 GO:0004857(InterPro)
Clacu09g0554 557 Pfam Pectinesterase 242 539 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Clacu09g0554 557 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 30 179 IPR035513 -
Clacu09g0554 557 PANTHER PECTINESTERASE 10 546 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Clacu09g0554 557 FunFam Pectinesterase 29 179 - -
Clacu09g0554 557 SMART PMEI_2 22 176 IPR006501 GO:0004857(InterPro)
Clacu09g0554 557 Gene3D - 236 555 IPR012334 -
Clacu09g0554 557 CDD PMEI-like_3 30 178 - -
Clacu09g0554 557 Gene3D Invertase/pectin methylesterase inhibitor family protein 28 179 IPR035513 -
Clacu09g0554 557 SUPERFAMILY Pectin lyase-like 237 554 IPR011050 -
Clacu09g0554 557 ProSitePatterns Pectinesterase signature 2. 388 397 IPR033131 -
Clacu09g0554 557 FunFam Pectinesterase 235 555 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2398 Clacu-Chr5:32299462 Clacu09g0554 Clacu-Chr9:4716330 1.50E-150 dispersed
Clacu09g0554 Clacu-Chr9:4716330 Clacu10g0004 Clacu-Chr10:445953 2.70E-104 dispersed
Clacu09g0554 Clacu-Chr9:4716330 Clacu09g0555 Clacu-Chr9:4738639 6.10E-112 tandem
Clacu02g0119 Clacu-Chr2:1276120 Clacu09g0554 Clacu-Chr9:4716330 3.50E-160 transposed
Clacu11g1635 Clacu-Chr11:27504948 Clacu09g0554 Clacu-Chr9:4716330 1.60E-176 transposed
Clacu06g0481 Clacu-Chr6:5595222 Clacu09g0554 Clacu-Chr9:4716330 1.80E-90 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g0554 K01051 - csv:101205321 1006.51