Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g0555 ATGTTTGGCCTCAAAAACAGAGCTCAAATCCCTTCAAATCCCACCTCCATTTCCACCATTTCTACATTCTTCTTCATTTTCTTCCTCTTCTCCTTCAAACCCATTTCTTCAAATCCCCAAATCCACCAAACCGCTCGATCCCTTTGCAATGGCACTCTGTTTCCAAACCTCTGTTTCTCAAAGCTCTCTTCTTTTCCCCAATTGGCTTCCCTCTCGCCGCAAAAGCTCGCCGGCAGCGCCCTCAACTTCACTGCCCGCGAGGTCCTCGATGCCTACGCCAATTGCACCAAGCTCAAGACTCACCTTTACTGTGGCCTGAATCCCACCGACCGTCGGGCCCTCGATGACTGTCTTGAGCTTCTCGACGGCAGCATTGCCGAGCTCAAAGCTTCGATCTGCGATCTAGCGCCGCCGCAGTCCGCTGCCCGTCACTCCCATGATCTGTTGACATTGGTCAGCGCCGCCATGACTAACCACCGGACTTGTGTTGATGGGTTTTATAATAGTTCTGGGACTGTGAGGAGACGGGTGGAGCAGTATTTGGGGAAAATTGGACAGCATTTAAGTATTGATTTGGCGATGTTGAAGAAAATCCCTGGAGTTAATAGGGGTGCGGCGGCAGGGGAGGTGTTGCCTGAGTATGGGGCGGTGAAAGGTGGGTTTCCAAAGTGGGTTTCGGTTAAGGATCGGAGATTGTTGCAGGCGGCGGTGAATGAGACGAATTTTAATTTGGTGGTGGCGAAGGATGGCTCTGGGAATTTCACCACTGTCGGTGAGGCCGTCGCCGCCGCTCCGAATTCGAGCACCACCAGGTTTGTAATATACATAAAAGCAGGGGCTTATTTTGAGAACGTGGAAATAGAAAGGGCAAAGGCAAACTTGATGTTTATCGGCGACGGTATCGGAAAGACGCTGATAAAAGGTGACCGGAACGTCGTAGACGGCTGGACTACTTTCCGATCAGCCACCGTGGCGGTGGTTGGCACCGGGTTCATAGCAAAAGGCATAACATTTGAAAACTACGCGGGTCCAAGCAAGCACCAAGCCGTAGCCTTACGAAGCAATTCCGACTTCTCTGCATTTTACCAATGCAGCTTCGTTGGGTATCAAGACACTCTCTACGTTCACTCCCTCCGTCAATTCTACCGCGAATGCGATATCTACGGTACCATCGACTTTATCTTTGGTAACGCTGCTGTCGTTTTCCAAAATTGCAACCTTTATGCTCGAAAACCCAACCCTAACCAACGCAACATATTCACTGCCCAAGGTCGTGAGGACCCTAACCAAAACACAGGAATCTCAATCCTCAATTGTAAGGTTGAAGCCGCTGCCGATCTAATCCCCGTTCTTTCCTCGTTCAAAACTTACTTGGGCCGACCCTGGAAGTTGTACTCGAGGACCGTTTTTCTCCGGTCGTTTATTGGCCAATTGGTTGACCCGGCCGGGTGGCTTGAGTGGAACGGGACGTTTGCGTTGGATACTTTGTATTATGGGGAGTATTTGAACCGTGGGCCCGGTTCGAATGTGACTGGACGAGTTACTTGGCCGGGGTATCGGGTCATTGCTAATGCGACGGAAGCGAGCCAGTTTACGGTTGAGGGGTTTATACAGGGTAGCTCGTGGTTGAACTCAACCGGGATTCCTTTCTTCTCTGGTTTGGCTTGA 1668 50.84 MFGLKNRAQIPSNPTSISTISTFFFIFFLFSFKPISSNPQIHQTARSLCNGTLFPNLCFSKLSSFPQLASLSPQKLAGSALNFTAREVLDAYANCTKLKTHLYCGLNPTDRRALDDCLELLDGSIAELKASICDLAPPQSAARHSHDLLTLVSAAMTNHRTCVDGFYNSSGTVRRRVEQYLGKIGQHLSIDLAMLKKIPGVNRGAAAGEVLPEYGAVKGGFPKWVSVKDRRLLQAAVNETNFNLVVAKDGSGNFTTVGEAVAAAPNSSTTRFVIYIKAGAYFENVEIERAKANLMFIGDGIGKTLIKGDRNVVDGWTTFRSATVAVVGTGFIAKGITFENYAGPSKHQAVALRSNSDFSAFYQCSFVGYQDTLYVHSLRQFYRECDIYGTIDFIFGNAAVVFQNCNLYARKPNPNQRNIFTAQGREDPNQNTGISILNCKVEAAADLIPVLSSFKTYLGRPWKLYSRTVFLRSFIGQLVDPAGWLEWNGTFALDTLYYGEYLNRGPGSNVTGRVTWPGYRVIANATEASQFTVEGFIQGSSWLNSTGIPFFSGLA 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4738639 4744884 + ClG42_09g0055500.10 Clacu09g0555 256863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g0555 555 Pfam Plant invertase/pectin methylesterase inhibitor 46 194 IPR006501 GO:0004857(InterPro)
Clacu09g0555 555 SUPERFAMILY Pectin lyase-like 241 553 IPR011050 -
Clacu09g0555 555 Gene3D Invertase/pectin methylesterase inhibitor family protein 44 200 IPR035513 -
Clacu09g0555 555 FunFam Pectinesterase 237 554 - -
Clacu09g0555 555 CDD PMEI-like_3 47 200 - -
Clacu09g0555 555 Gene3D - 237 554 IPR012334 -
Clacu09g0555 555 ProSitePatterns Pectinesterase signature 2. 387 396 IPR033131 -
Clacu09g0555 555 Pfam Pectinesterase 243 539 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Clacu09g0555 555 PANTHER PECTINESTERASE 21 545 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Clacu09g0555 555 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 46 199 IPR035513 -
Clacu09g0555 555 SMART PMEI_2 40 194 IPR006501 GO:0004857(InterPro)
Clacu09g0555 555 NCBIfam pectinesterase inhibitor domain 20 197 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0044 Clacu-Chr1:402410 Clacu09g0555 Clacu-Chr9:4738639 7.00E-138 dispersed
Clacu01g2289 Clacu-Chr1:33874233 Clacu09g0555 Clacu-Chr9:4738639 7.20E-121 dispersed
Clacu05g1051 Clacu-Chr5:9395563 Clacu09g0555 Clacu-Chr9:4738639 3.00E-133 dispersed
Clacu07g1434 Clacu-Chr7:29053467 Clacu09g0555 Clacu-Chr9:4738639 2.70E-131 dispersed
Clacu09g0555 Clacu-Chr9:4738639 Clacu10g0004 Clacu-Chr10:445953 6.00E-128 dispersed
Clacu09g0554 Clacu-Chr9:4716330 Clacu09g0555 Clacu-Chr9:4738639 6.10E-112 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g0555 K01051 - csv:101205557 999.964