Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g0600 ATGGCCAGCATCAAAGTCCATGGACTCGCCCTTTCCGTACCAACATGCAAGGTTCTAGCTTGTCTCTACGAGAAAGACCTCGAATTCGAGTTTATCAATGTCAAGATGCACGAAGCGGAACATAAGAAACCCCACTTTCTCTCCATCAATCCTTTTGGTCAAATTCCTGGGTTCCAAGATGGGGATTTGACACTTTTTGAATCCAGGGCAATCACGCAGTACATCGCGAGAAATTATGCTAACAATGGAACCCAATTGATTCCCCAAGACATAAAGCAAGCAGCTACAGTATTAACATGGATTGAAGTGGAGAGTCATCATTTTGATCCACCAGCCTCGAAACTTGTGTATGAGCTCTGTTTGAAGCCAAAGCTTGGTTGGGGTGAGACAGATGTTGCAGTGGTTGAGCAAAAGGAAGCTGAGTTAGCCAAAGTTGTTGACATCTATGAGAAGAAGCTGGCTCAATCCAAGTACTTGGGAGGGGAGTCCTTCAGTTTGGCTGATTTGCTCCATATCCCAGCCATAGGGTTCTTGTTGGAGACACAAACCAAGGAACTGTTTGAATCTCGGCCCCATGTCAATGCTTGGGTGGCTGATATCATGGCCAGGCCGGCTTGGGCTAAGGTGCTTGCTTTGCGTAAGTAA 645 46.36 MASIKVHGLALSVPTCKVLACLYEKDLEFEFINVKMHEAEHKKPHFLSINPFGQIPGFQDGDLTLFESRAITQYIARNYANNGTQLIPQDIKQAATVLTWIEVESHHFDPPASKLVYELCLKPKLGWGETDVAVVEQKEAELAKVVDIYEKKLAQSKYLGGESFSLADLLHIPAIGFLLETQTKELFESRPHVNAWVADIMARPAWAKVLALRK 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5130537 5131351 + ClG42_09g0060000.10 Clacu09g0600 256908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g0600 214 Gene3D Glutaredoxin 2 87 - -
Clacu09g0600 214 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 90 214 IPR010987 -
Clacu09g0600 214 Pfam Glutathione S-transferase, N-terminal domain 13 77 IPR004045 -
Clacu09g0600 214 SUPERFAMILY GST C-terminal domain-like 74 213 IPR036282 -
Clacu09g0600 214 CDD GST_C_Phi 92 210 IPR034347 -
Clacu09g0600 214 SFLD Main.5: Phi-like 1 212 - -
Clacu09g0600 214 FunFam Glutathione S-transferase F2 3 87 - -
Clacu09g0600 214 CDD GST_N_Phi 4 78 - -
Clacu09g0600 214 PANTHER GLUTATHIONE S-TRANSFERASE RHO 1 213 - GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)|GO:0043295(PANTHER)
Clacu09g0600 214 Gene3D - 90 214 - -
Clacu09g0600 214 SFLD Main (cytGST) 1 212 - -
Clacu09g0600 214 Pfam Glutathione S-transferase, C-terminal domain 118 204 IPR004046 -
Clacu09g0600 214 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 2 83 IPR004045 -
Clacu09g0600 214 SUPERFAMILY Thioredoxin-like 1 88 IPR036249 -
Clacu09g0600 214 FunFam Glutathione S-transferase F2 88 210 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu09g0600 Clacu-Chr9:5130537 Clacu09g0602 Clacu-Chr9:5135894 5.70E-50 dispersed
Clacu09g0599 Clacu-Chr9:5120066 Clacu09g0600 Clacu-Chr9:5130537 3.00E-91 tandem
Clacu09g0600 Clacu-Chr9:5130537 Clacu09g0601 Clacu-Chr9:5132466 1.10E-77 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g0600 K00799 - csv:101212536 384.415