Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g0601 ATGGCGAGCATCAAAGTCCATGGAAGCCCCATTTCCACTGCCACAGCCAGAGTTCTCGCTTGTCTTTATGAGAAAGATCTCGATTACGAGTTTGTTCTTCTGGATATGAAAAATAACGAGCACAAGAAACACCCCTTTCTCTCCATTAACCCGTTTGGTCAAGTTCCTGGGTTTCAAGATGGGGATCTCACCATTTTCGAATCAAGGGCCATTACTCAATACTTGGCCAACGCCTACGCCAGCAAGGGAACCCAATTGATCTCCAACGACCCGAAGAAAGCGGCGATCATATCAACGTGGATTGAAGTGGAGGGCCACCATTACGACCCACCGGCGGTTGCTCTGTCGTTTGAGCATCTAGTCAAGCCGCTGTTTGGACTCGGTGAAACTGATCCCGCAGCGGTAGCGGAGAACGAAGCCAAGCTGGGGAAAGTTCTTGACATCTACGAGAATCAGCTTAGCAGAAACAAGTTCTTGGCTGGGGATGAGTTCAGTTTGGCGGATCTGCATCATATACCCAATGTGAGCTACTTGTTCATGACGCCGTCGAAGAAGCTGTTCGAGTCACGGCCACGTGTCAACGCTTGGGTGGCCGAGATCACTGCAAGGCCTTCGTGGGCTAAAGTTGTTGCCTTGCGCAACCAGAGTTAA 651 50.38 MASIKVHGSPISTATARVLACLYEKDLDYEFVLLDMKNNEHKKHPFLSINPFGQVPGFQDGDLTIFESRAITQYLANAYASKGTQLISNDPKKAAIISTWIEVEGHHYDPPAVALSFEHLVKPLFGLGETDPAAVAENEAKLGKVLDIYENQLSRNKFLAGDEFSLADLHHIPNVSYLFMTPSKKLFESRPRVNAWVAEITARPSWAKVVALRNQS 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5132466 5133952 - ClG42_09g0060100.10 Clacu09g0601 256909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g0601 216 Gene3D - 90 214 - -
Clacu09g0601 216 Gene3D Glutaredoxin 1 87 - -
Clacu09g0601 216 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 2 83 IPR004045 -
Clacu09g0601 216 FunFam Glutathione S-transferase F2 88 210 - -
Clacu09g0601 216 CDD GST_C_Phi 92 210 IPR034347 -
Clacu09g0601 216 Pfam Glutathione S-transferase, C-terminal domain 129 204 IPR004046 -
Clacu09g0601 216 PANTHER GLUTATHIONE S-TRANSFERASE RHO 1 215 - GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)|GO:0043295(PANTHER)
Clacu09g0601 216 Pfam Glutathione S-transferase, N-terminal domain 5 77 IPR004045 -
Clacu09g0601 216 CDD GST_N_Phi 4 76 - -
Clacu09g0601 216 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 90 216 IPR010987 -
Clacu09g0601 216 SUPERFAMILY Thioredoxin-like 1 82 IPR036249 -
Clacu09g0601 216 FunFam Glutathione S-transferase F2 3 87 - -
Clacu09g0601 216 SUPERFAMILY GST C-terminal domain-like 74 212 IPR036282 -
Clacu09g0601 216 SFLD Glutathione Transferase (cytosolic) 1 212 IPR040079 -
Clacu09g0601 216 SFLD Main.5: Phi-like 1 212 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1561 Clacu-Chr8:25444325 Clacu09g0601 Clacu-Chr9:5132466 8.40E-49 dispersed
Clacu09g0599 Clacu-Chr9:5120066 Clacu09g0601 Clacu-Chr9:5132466 5.60E-82 dispersed
Clacu09g0600 Clacu-Chr9:5130537 Clacu09g0601 Clacu-Chr9:5132466 1.10E-77 tandem
Clacu09g0601 Clacu-Chr9:5132466 Clacu09g0602 Clacu-Chr9:5135894 5.70E-50 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g0601 K00799 - csv:101212771 412.92