Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g0604 ATGAGGAGAAAATCCAAAACCCTAAGAACGACGATGACGACGAGGAGGAAGAAGATGAAAGGGACATTGACGAGGCACTTGCAGGTTCAGTTAGGGCAAGTTTCACTCGCTCCTCTCCACCTCCACCGCTCCTCTTCCGCCGCCGCTGCTTGCTTCCAGGACTTGCCTGAATCTGAAGCACCGCCGACGGTCAACGTTTCTGACGCTCTCCCCTCCTCCTCTCCTAACTTTGAGGACAGAGATTTCATTCTTAGCCAGGACTTCTTCTGCACCCCTGACTATATCACCCCGGACAATCAAAATTTGTTGAATGGTGTGGATAACAATGAGGAATGCATTCCTTGCCCAAAATCTCCAGAGAAGATTAATACTGTGAAAACTAAGAGAAAAATACATGAAAGTGTTTTAGTACATCCTCTGAGTCCGAGTTTGTCTGGCTGCGAACAAGTTGTGGAGCTTGGAAACGACATGTTTGGATCAGATGATGTGGATATGGAGAAAGAGACAATGGCCATGCCAAAGAAAGGAAACTATGTTTCTCAATCTGCAGTTGCTCTACGCTGTCGAGTTATGCCTCCTCCTTGCATGAAGAACCCATACCTGAAAGATGCTTCAGATGTAGGCATAGACCCATTTGGTAATCAACGAACAAAATGTGCAGGTTTTTTTCCTGCTCTGTTTAGTGGAGATGGTCTTTCAAGATATCACACTGATTTTCATGAGATAAAGCAAATAGGGACTGGAAATTTTAGCCGTGTCTTCAAGGTATTAAAGAGAATTGATGGTTGCTTATATGCTGTCAAACAAAGCACAAGACCGTTGAATCAAGAAATAGAAAGGAGGAGAGCTTTGATGGAAGTTCAAGCTTTGGCAGCTTTAGGATCTCATGAAAACATTGTTGGATACTACTCTTCATGGTTTGAAAATGAACAACTCTATATTCAAATGGAGCTCTGTGATTGTAGTTTATCAATTGGCAGGTATTCCCACCCATTCTCTGAGGTAGATGCGCTGAGAGCCTTGTATCAGATTGCAAAGGCATTGCTATTTGTGCACGAGAAAGGAGTAGCACATTTAGATGTGAAACCTGACAATATTTATGTCAAAGATGGTGTCTATAAACTTGGTGATTTTGGGTGTGTTACGCTTCTTGATAAGAGCCTACCGATTGAGGAGGGTGATGCACGCTATATGCCTCAAGAAATTCTGAATGAAAGATATGATTATCTTGACAAAGTTGATATTTTCTCCTTGGGAGCTGCTATTTATGAAATTGCCCGAGGATCCACATTACCAGAAACGCATTTTATGAACCTTAAGGAGGGAAAATTGCCACTCCTTCCTGGTCATTCATTGCAATTTCAAAACTTAATCAAGGCTATGGTGGATCCTGACCCGACACGGCGTCCTTCGGCAAGGGAAGTTCTTGAGAATCCAATATTTGATAAGGTCAGAAATCATAAACAATCATAG 1473 42.57 MRRKSKTLRTTMTTRRKKMKGTLTRHLQVQLGQVSLAPLHLHRSSSAAAACFQDLPESEAPPTVNVSDALPSSSPNFEDRDFILSQDFFCTPDYITPDNQNLLNGVDNNEECIPCPKSPEKINTVKTKRKIHESVLVHPLSPSLSGCEQVVELGNDMFGSDDVDMEKETMAMPKKGNYVSQSAVALRCRVMPPPCMKNPYLKDASDVGIDPFGNQRTKCAGFFPALFSGDGLSRYHTDFHEIKQIGTGNFSRVFKVLKRIDGCLYAVKQSTRPLNQEIERRRALMEVQALAALGSHENIVGYYSSWFENEQLYIQMELCDCSLSIGRYSHPFSEVDALRALYQIAKALLFVHEKGVAHLDVKPDNIYVKDGVYKLGDFGCVTLLDKSLPIEEGDARYMPQEILNERYDYLDKVDIFSLGAAIYEIARGSTLPETHFMNLKEGKLPLLPGHSLQFQNLIKAMVDPDPTRRPSAREVLENPIFDKVRNHKQS 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5150231 5154724 + ClG42_09g0060400.10 Clacu09g0604 256912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g0604 490 Gene3D Phosphorylase Kinase; domain 1 229 318 - -
Clacu09g0604 490 ProSitePatterns Serine/Threonine protein kinases active-site signature. 356 368 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu09g0604 490 FunFam Wee1-like protein kinase 318 485 - -
Clacu09g0604 490 ProSitePatterns Protein kinases ATP-binding region signature. 245 268 IPR017441 GO:0005524(InterPro)
Clacu09g0604 490 ProSiteProfiles Protein kinase domain profile. 239 481 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g0604 490 Pfam Protein kinase domain 239 481 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g0604 490 SUPERFAMILY Protein kinase-like (PK-like) 232 485 IPR011009 -
Clacu09g0604 490 SMART serkin_6 239 481 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g0604 490 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 35 477 IPR050339 GO:0004672(PANTHER)|GO:0004713(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)
Clacu09g0604 490 Gene3D Transferase(Phosphotransferase) domain 1 319 486 - -
Clacu09g0604 490 FunFam WEE protein kinase 229 317 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu09g0604 Clacu-Chr9:5150231 Clacu10g1360 Clacu-Chr10:26666681 2.30E-14 dispersed
Clacu09g0604 Clacu-Chr9:5150231 Clacu05g0482 Clacu-Chr5:4005197 1.80E-22 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73814 PF00069 Pkinase 5.50E-47 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g0604 K06632 - csv:101213255 891.338