Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g0606 ATGGAAGTCGATCGGACGGCCGAAAACGATCACTTTCCCGATTTCCAAGAAAGCTCCGACCACTCAACCCCCGACTTGCCGGAAAGGAAGCTCCGACGAAACGATTCATTGGACGTAGAATCCCGCACCGTCTCCGGCGCCGGCGCCCATGGCCACAAGGCGGCGGCGACGGCGAGCTGGGGAGTGATTTTACATCTGGCGTTTCAGAGCGTGGGAATTGTGTACGGCGATATCGGAACGTCGCCGTTGTATGTGTATGCAAGCACATTCACGGACGGAATCAAGCATAACGACGACGTTTTGGGTGTCCTATCTTTGATTCTCTACACTCTCACTTTGATCCCTTTGCTTAAGTATGTCTTCTTCGTCTTGCAAGCCAATGACAACGGCGAAGGTGGAACATTTGCTTTATACTCATTACTATGCCGATACGCAAAAATTGGGCTAATACCAAGCCAGCAAGTGGAAGATCAAGAGGTATCAAATTTTCAGGTGGACCTTCCCTCCGGCCGCCTTAAAATGGCGTCTTGCCTTAAATCCAAACTTGAAAACTCCACTGCCGCCAAGATTTTCTTGCTCTTCGCCACCATGCTCGGCACTTCCATGGTCATCGGCGACGGCGTCCTCACTCCTTCCATCTCTGTTTTGTCGGCCGTCGGAGGAATCAAGAATGCAACCTCGACCATGACACAAGATAAAATAGTTTGGATATCAGCAGCAATCTTGGTTTGCTTATTCATGGTACAAAGATTTGGAACCCATAAAGTTGGATATTCCTTTGCTCCAATTATTTGCATTTGGTTTGCACTTATTGGTGGAATTGGCTTCTACAATTTTTTGAAATTTGACCCTGCTGTCATCAAAGCTGTTAATCCAAAATACATTTTTGACTACTTCAAAAGAAACAAAAAGGACGCTTGGATCTCTCTCGGCGGTGTCGTTCTTGCCATTACTGGGACAGAAGCTCTCTTTGCGGACGTGGGGCACTTCACTGTGATGTCTATAAGACTAAGCATGTGTTGTGTGGCCTACCCCGCCCTAGTCTCCGCCTATGTCGGCCAAGCTGCCTTCCTTCGTAAGCATACCGATCTCGTCTCGGACACCTTCTTTAGCTCCATTCCAGGTCCTCTCTACTGGCCGACGTTCGTGGTGGCCGTGCTTGCGTCCATCGTGGCCAGCCAAGCCATGATCTCTGGCACCTTCTCCATCATCCAACAGTCCCTCTCCTATGGCTGTTTCCCTAGAGTTAAAGTTGTTCATACTTCTTCCAAGTATGAGGGCCAAGTTTACATACCTGAAGTTAACTATCTTCTTATGTTGGCTTGTCTTGGAGTCACTCTAGGGTTTAAAGATACAACACGAATAGGGAACGCTTATGGCATTGCAGTGGTGTTTGTAATGGCACTCACTTCAAGTTTCCTAGTGCTCATCATGATCATGATATGGAAATCTCACATACTTATCATAATTTCCTATGTTCTCACCATTGGCTTATTAGAACTTTTCTATCTAAGTTCAGTCCTTTACAAGTTTGATCAAGGTGGCTATCTTCCTTTAGCTTTTGCTGGATTTTTAATGACAATAATGTACATTTGGAATGATGTTCATAGAAGAAAATACTACTATGAACTTGAACACAAGATTTCTCCTCAAAAGCTCAAGGACATTGCTTCTCTCACAACTCTCAATCGTGCCCCTGGCCTTGCCTTGTTCTACTCTGAGCTTGTCCAAGGCATTCCTCCAATCTTCAAGCATTATCTATCCAACATTCCCACTCTCCAAAGGGTCCTTGTCTTCGTATCGTTCAAGTCCCTCCCGATAAGTAAAGTCCCGATGGAAGAGCGGTTTCTATTTCGACGAGTTGAACCCGATGACCTTAACGTGTTTCGATGCGTGGTAAGATATGGTTATAGAGATATCATCCACGAGCAAGAGTCGTTCGAGAGAGTGCTGGTGGAGAGGTTGAAAATGTTTATAGAGGAGGAGTCGTGGAAGCTGCAAAATGACAACGACGATAATAGAAGGAGGAGAACAGGAGAGGAGATAGAGGTGGTTGATAGGGCTTGGAGAGATGGAATTGTTCACTTGATTGGACAAAACGAGGTTGTGGCAAGTAAAGGGTCAAGGTTAGCAAAAAGGGTTTTGATCAATTATGCTTATAATGCATTGAGGAGAAATTTGAGACAAAGTGAAGAGGTCTTTTACATTCCAAGAAAACGAATGCTCAAAGTGGGAATGACTTATGAGCTTTAG 2253 45.45 MEVDRTAENDHFPDFQESSDHSTPDLPERKLRRNDSLDVESRTVSGAGAHGHKAAATASWGVILHLAFQSVGIVYGDIGTSPLYVYASTFTDGIKHNDDVLGVLSLILYTLTLIPLLKYVFFVLQANDNGEGGTFALYSLLCRYAKIGLIPSQQVEDQEVSNFQVDLPSGRLKMASCLKSKLENSTAAKIFLLFATMLGTSMVIGDGVLTPSISVLSAVGGIKNATSTMTQDKIVWISAAILVCLFMVQRFGTHKVGYSFAPIICIWFALIGGIGFYNFLKFDPAVIKAVNPKYIFDYFKRNKKDAWISLGGVVLAITGTEALFADVGHFTVMSIRLSMCCVAYPALVSAYVGQAAFLRKHTDLVSDTFFSSIPGPLYWPTFVVAVLASIVASQAMISGTFSIIQQSLSYGCFPRVKVVHTSSKYEGQVYIPEVNYLLMLACLGVTLGFKDTTRIGNAYGIAVVFVMALTSSFLVLIMIMIWKSHILIIISYVLTIGLLELFYLSSVLYKFDQGGYLPLAFAGFLMTIMYIWNDVHRRKYYYELEHKISPQKLKDIASLTTLNRAPGLALFYSELVQGIPPIFKHYLSNIPTLQRVLVFVSFKSLPISKVPMEERFLFRRVEPDDLNVFRCVVRYGYRDIIHEQESFERVLVERLKMFIEEESWKLQNDNDDNRRRRTGEEIEVVDRAWRDGIVHLIGQNEVVASKGSRLAKRVLINYAYNALRRNLRQSEEVFYIPRKRMLKVGMTYEL 750
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5179953 5187049 + ClG42_09g0060600.10 Clacu09g0606 256914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g0606 750 MobiDBLite consensus disorder prediction 1 45 - -
Clacu09g0606 750 MobiDBLite consensus disorder prediction 1 39 - -
Clacu09g0606 750 Pfam K+ potassium transporter integral membrane domain 66 552 IPR053951 -
Clacu09g0606 750 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 49 749 IPR003855 GO:0006813(PANTHER)|GO:0015079(InterPro)|GO:0015079(PANTHER)|GO:0016020(InterPro)|GO:0016020(PANTHER)|GO:0071805(InterPro)
Clacu09g0606 750 NCBIfam potassium uptake protein 66 749 IPR003855 GO:0015079(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Clacu09g0606 750 Pfam K+ potassium transporter C-terminal domain 566 750 IPR053952 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g1207 Clacu-Chr7:26945961 Clacu09g0606 Clacu-Chr9:5179953 2.90E-224 dispersed
Clacu09g0606 Clacu-Chr9:5179953 Clacu10g1060 Clacu-Chr10:22538122 4.70E-301 dispersed
Clacu09g0605 Clacu-Chr9:5161440 Clacu09g0606 Clacu-Chr9:5179953 6.80E-292 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g0606 K03549 - csv:101213493 1372.07