Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu09g0607 | ATGGATGAAAACACAGGCATGTCAGAGAGATTAGTAGAATTTAAGTACGATTTCAGCGGCGGCGGTGGCGGTGTCGGTGGTAGCACCGGTGGTTCGAGTGAGGAAGCTGGTAACGGCGTTGGCGGGGTCGTAAAAGAGCAAGATCGGTTACTTCCAATAGCAAATGTGGGGAGGATCATGAAGCAAATTCTACCTCCAAATGCCAAAATCTCCAAAGAAGCCAAAGAAACTATGCAAGAGTGCGTGTCGGAGTTCATCAGTTTCGTGACAGGCGAGGCGTCGGATAAGTGCCATAAAGAGAAGAGGAAGACTGTTAATGGTGATGATATTTGCTGTGCTTTGGCCACACTTGGATTTGATGATTATGCTGAGCCTTTGAGAAGGTATTTGGTTAGGTATAGAGATATGGAGGGGGAGAGAGCTCAACAAAATAAGGGATGTTGCAATAATAATACTAATAATAATAATCATGATGCATGA | 480 | 44.58 | MDENTGMSERLVEFKYDFSGGGGGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNTNNNNHDA | 159 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 5200359 | 5200838 | - | ClG42_09g0060700.10 | Clacu09g0607 | 256915 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu09g0607 | 159 | SUPERFAMILY | Histone-fold | 47 | 156 | IPR009072 | GO:0046982(InterPro) | |
Clacu09g0607 | 159 | FunFam | Nuclear transcription factor Y subunit B-3 | 41 | 159 | - | - | |
Clacu09g0607 | 159 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 50 | 114 | IPR003958 | - | |
Clacu09g0607 | 159 | Gene3D | Histone, subunit A | 42 | 159 | IPR009072 | GO:0046982(InterPro) | |
Clacu09g0607 | 159 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 81 | 97 | IPR003956 | GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Clacu09g0607 | 159 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 41 | 149 | IPR027113 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER) | |
Clacu09g0607 | 159 | PRINTS | CCAAT-binding transcription factor subunit A signature | 97 | 115 | - | - | |
Clacu09g0607 | 159 | PRINTS | CCAAT-binding transcription factor subunit A signature | 78 | 96 | - | - | |
Clacu09g0607 | 159 | PRINTS | CCAAT-binding transcription factor subunit A signature | 116 | 134 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu03g1738 | Clacu-Chr3:31173549 | Clacu09g0607 | Clacu-Chr9:5200359 | 6.30E-31 | dispersed | |
Clacu06g1617 | Clacu-Chr6:26983386 | Clacu09g0607 | Clacu-Chr9:5200359 | 4.50E-12 | dispersed | |
Clacu09g0607 | Clacu-Chr9:5200359 | Clacu10g0408 | Clacu-Chr10:5163115 | 1.30E-38 | dispersed | |
Clacu09g0607 | Clacu-Chr9:5200359 | Clacu10g2029 | Clacu-Chr10:33755927 | 1.60E-36 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48301 | PF00808 | CBFD_NFYB_HMF | 6.80E-27 | CL0012 | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu09g0607 | K08065 | - | csv:101204763 | 275.018 |