Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g0607 ATGGATGAAAACACAGGCATGTCAGAGAGATTAGTAGAATTTAAGTACGATTTCAGCGGCGGCGGTGGCGGTGTCGGTGGTAGCACCGGTGGTTCGAGTGAGGAAGCTGGTAACGGCGTTGGCGGGGTCGTAAAAGAGCAAGATCGGTTACTTCCAATAGCAAATGTGGGGAGGATCATGAAGCAAATTCTACCTCCAAATGCCAAAATCTCCAAAGAAGCCAAAGAAACTATGCAAGAGTGCGTGTCGGAGTTCATCAGTTTCGTGACAGGCGAGGCGTCGGATAAGTGCCATAAAGAGAAGAGGAAGACTGTTAATGGTGATGATATTTGCTGTGCTTTGGCCACACTTGGATTTGATGATTATGCTGAGCCTTTGAGAAGGTATTTGGTTAGGTATAGAGATATGGAGGGGGAGAGAGCTCAACAAAATAAGGGATGTTGCAATAATAATACTAATAATAATAATCATGATGCATGA 480 44.58 MDENTGMSERLVEFKYDFSGGGGGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNTNNNNHDA 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5200359 5200838 - ClG42_09g0060700.10 Clacu09g0607 256915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g0607 159 SUPERFAMILY Histone-fold 47 156 IPR009072 GO:0046982(InterPro)
Clacu09g0607 159 FunFam Nuclear transcription factor Y subunit B-3 41 159 - -
Clacu09g0607 159 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 50 114 IPR003958 -
Clacu09g0607 159 Gene3D Histone, subunit A 42 159 IPR009072 GO:0046982(InterPro)
Clacu09g0607 159 ProSitePatterns NF-YB/HAP3 subunit signature. 81 97 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu09g0607 159 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 41 149 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER)
Clacu09g0607 159 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Clacu09g0607 159 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Clacu09g0607 159 PRINTS CCAAT-binding transcription factor subunit A signature 116 134 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1738 Clacu-Chr3:31173549 Clacu09g0607 Clacu-Chr9:5200359 6.30E-31 dispersed
Clacu06g1617 Clacu-Chr6:26983386 Clacu09g0607 Clacu-Chr9:5200359 4.50E-12 dispersed
Clacu09g0607 Clacu-Chr9:5200359 Clacu10g0408 Clacu-Chr10:5163115 1.30E-38 dispersed
Clacu09g0607 Clacu-Chr9:5200359 Clacu10g2029 Clacu-Chr10:33755927 1.60E-36 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48301 PF00808 CBFD_NFYB_HMF 6.80E-27 CL0012 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g0607 K08065 - csv:101204763 275.018