Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g0608 ATGGGAATCTCTAACATTACAGGTGAAATTCATCATCCAAACTTGTCTTCAGGCAACAATGTGGAAGATCAATTAGAAGAAGTTGAACAAAACAATAATCAACATCAACTTCTTAATCACTTCCTCTATGGCTCTCCCAATGGAGATCAAACCAACTCCCATGGCTCATCTAATTCACTTGATCCCCACCAACAAAGAGTTAAGAAGAAGCGAAATCTTCCCGGCACTCCAGATCCAAATGCTGAAGTTATTGCTCTATCACCGACAACCCTAATGGCTAGAAATAGGTTTGTGTGTGAGATTTGCAACAAAGGGTTTCAAAGAGATCAAAACCTTCAATTGCATAGGAGAGGCCACAACCTGCCATGGAAACTCCGGCAAAGAACCGGCACCGAAGTGAAGAAAAGGGTCTATGTGTGCCCCGAACTGACATGCGTTCATCACAACCCGGCCCGAGCTCTCGGCGATCTTACCGGAATTAAGAAGCATTTTAGTCGAAAGCATGGGGAGAAGAAATGGAAGTGTGAGAAATGCTCCAAGAAATATGCAGTTCAATCTGATTTGAAAGCTCATCAAAAGACTTGTGGCACTAGGGAATACAAATGTGATTGTGGAACTCTATTTTCCAGAAGGGACAGCTTCATCACCCACAGAGCCTTTTGCAATGCATTAACAGAAGAAAACAACAAACTAAAGCAAGGAATTCTCAATAATAATAATAATAATAATGATAACATAGAACCAACCTCAATTATCTCCACTCCAAAACTCCCTCCTTTTGGCACATCAATCATCCCTGAATTCAACCCTTATGATCAAAAAAACCCTTTTAAATCCCTCCCCCAAGAACTCAGCAACTCGGCCCCGGCCACCGGTGCACCTGGAGGCTTGTTCATGGTCGGACCCCGAAGCAGCAACAACTCTTCTTCTTTTTCAAACCTTAAGCTCAGCTCCACCACCTCTTCGCGCTTTAGTTGCCTTTATGATAGTAAAAATGGTTGCCTTCAGGATTCTGGGTCGGCAACAGCAGCATTGGTAACGTCGGCCACCGCCTTGTTACAGAAAGCTGCGCAAATAGGAGCAACGACAAGCTCCGTTGGTGTTCTGAAGTCACCATTGTTGGAAATACCTCATTCTGATGATCAAGCAGACGTGGTAGGGATGAATATGGGAATGTACGGACACATGATGATGATGAAAGAACAAGAGAATTGTAGTAGCAACAACTCAAGTTTTGTCGTCCACGAAAAGGGCCAGTGGCGACCAATGTCGAGATTTTCCGGTGGCAATAATGGCGGCGAAGAGAGTCAGATGATGACTTTGGATTTGTTGGGAGAAAGAGGGTGGAGGCTGAGGCAATTGCAGGGAGATGAAAGCCACCATCACCAGCAGGAGATGATGCCAATTATGAAGCATTTTAAGATGCACAACTTTCATGGGGATTCAAATGTTGACAAATCTATATTTGAGTATTGA 1476 43.77 MGISNITGEIHHPNLSSGNNVEDQLEEVEQNNNQHQLLNHFLYGSPNGDQTNSHGSSNSLDPHQQRVKKKRNLPGTPDPNAEVIALSPTTLMARNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTGTEVKKRVYVCPELTCVHHNPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDLKAHQKTCGTREYKCDCGTLFSRRDSFITHRAFCNALTEENNKLKQGILNNNNNNNDNIEPTSIISTPKLPPFGTSIIPEFNPYDQKNPFKSLPQELSNSAPATGAPGGLFMVGPRSSNNSSSFSNLKLSSTTSSRFSCLYDSKNGCLQDSGSATAALVTSATALLQKAAQIGATTSSVGVLKSPLLEIPHSDDQADVVGMNMGMYGHMMMMKEQENCSSNNSSFVVHEKGQWRPMSRFSGGNNGGEESQMMTLDLLGERGWRLRQLQGDESHHHQQEMMPIMKHFKMHNFHGDSNVDKSIFEY 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5230313 5233473 + ClG42_09g0060800.10 Clacu09g0608 256916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g0608 491 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 119 IPR013087 -
Clacu09g0608 491 MobiDBLite consensus disorder prediction 40 62 - -
Clacu09g0608 491 FunFam protein indeterminate-domain 12-like 76 144 - -
Clacu09g0608 491 Coils Coil 18 38 - -
Clacu09g0608 491 SMART c2h2final6 97 119 IPR013087 -
Clacu09g0608 491 SMART c2h2final6 138 168 IPR013087 -
Clacu09g0608 491 SMART c2h2final6 173 193 IPR013087 -
Clacu09g0608 491 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 172 196 - -
Clacu09g0608 491 FunFam protein indeterminate-domain 5, chloroplastic-like 151 230 - -
Clacu09g0608 491 Pfam Zinc finger, C2H2 type 97 119 IPR013087 -
Clacu09g0608 491 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 54 459 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Clacu09g0608 491 ProSiteProfiles Zinc finger C2H2 type domain profile. 173 201 IPR013087 -
Clacu09g0608 491 Gene3D Classic Zinc Finger 75 142 - -
Clacu09g0608 491 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 134 168 - -
Clacu09g0608 491 Gene3D Classic Zinc Finger 152 231 - -
Clacu09g0608 491 SUPERFAMILY beta-beta-alpha zinc fingers 96 194 IPR036236 -
Clacu09g0608 491 ProSitePatterns Zinc finger C2H2 type domain signature. 99 119 IPR013087 -
Clacu09g0608 491 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 199 239 - -
Clacu09g0608 491 MobiDBLite consensus disorder prediction 40 81 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1741 Clacu-Chr3:31189813 Clacu09g0608 Clacu-Chr9:5230313 4.50E-91 dispersed
Clacu08g1684 Clacu-Chr8:26474575 Clacu09g0608 Clacu-Chr9:5230313 6.00E-81 dispersed
Clacu09g0608 Clacu-Chr9:5230313 Clacu09g0733 Clacu-Chr9:6411890 2.40E-80 dispersed
Clacu09g0608 Clacu-Chr9:5230313 Clacu07g0903 Clacu-Chr7:22721403 2.00E-82 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48302 None None None None Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g0608 - - - 0.0