Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu09g0632 | ATGGTGGCTGGTGATGACGAACATTTCAGGCATGAGCCGCAACAATATGATTTGCGCTTCCGTGTAGAACAGATTTCTACATGGGTTGTTGTTGCGATGAAGAATATATTTCTTAGCTTACCATTTGATTCCTCCCTTTTGGACTCCTCCCTTTTGGACTCCTCTTCTCTCGATTCTTTTGGCGGTAGAGATAAGTGTGCGCTGAGGACTTGCCCAGTATTCGATCATTTCATGGAATCGTATATTGGAAACACTGTGATGAAGTTGGCTTTGAAAGCAGACCCCGAAGAGCATCGTGTTGCATTGTTTGTATTACTTCTCTGTGCTTGTATTGTAATTGGGCATCTTCTTGAGAAAAGTCGTTGGATAAATGAATCAGTCACTGCCATTTTCATTGGTCTTTTCACTGGAACTCTCATCTTATTAACAACCAAAGGCACAAACTCACGTATCCTAGTGTTTAGTGAAGAACTTTTCTTCACTTATGTTCTTCCACCAATTATTTTTAATGCCGGGTTTCAGGTGAAAAAGAAACAGTTCTTTCGAAACTTTATAACGATCATGTTGTTTGGGGCAGTTGGTACTGTGATCTCTTTTTTCATCATATCACTAGGTTCACTCCATTTATTCAAGAAATTTGGTATTGGCTTCTTAGACGTGGGTGATTATTTTGCCCTTGGAGCAATCTTATCAGCGACAGATAGTGTTTGCACCTTGCAGGTGCTTAATCAGGATGAGACTCCTTTACTGTATAGTCTAGTCTTTGGTGAAGGTGTTGTTAATGATGCTACTTCTGTCGTATTTTTCAAAGCAATCCAGAGATTCGACCTCTCTCACATGACCTCATCCAACGGCATTCAGCTTCTTGGAAACTTTTTCTATTTATTTTTTACGAGCACCTTGCTGGGAGCGATTGTTGGGTTGTCCAGTGCATACATCATAAAGAAGCTGTACTTTGCCAGGCACTCAACTGATCGGGAGGTTGCTTTGATGATTTTAATGCCTTACCTTTCATATATGACTGCTGAATTGTGCAATCTAAGTGGTATTCTTACCATGTTCTTTTGTGGGATTGTCATGTCTCATTACACTTGGCATAATGTGACTGAAAGTTCACGAGTGACCACCAAGCATACTTTTGCAACATTCTCATTTGTTTCAGAGATTTTCATCTTTCTATATGTTGGTATGGATGCCTTGGATATTGAGAAGTGGAAAGTTGTTGGCCAAAGGCCTTGGACATCGGCTGGAGTGAGTCTAATACTGCTCGGTTTAGTCCTTGTTGCGAGAGCAGCTTTTGTATTTCCACTTTCCTTTATATCGAACTTGACTAGAAAATCTCAGACTGACAAAATTGGGTTTAAGCAGCAGGTTACAATTTGGTGGGCTGGGCTCATGAGGGGTGCTGTATCTGTGGCCCTTGCTTATAATCAGTTTACGAGGTCAGGGCACACGCAACTACAAGGGAATGCCATCATGATTACTAGCACAATCACAATTGTTCTCATCACCAATGTGGTATTTGGACTATTAACTAAGCCTATTGTAAGGTACATGCTTTCACTGCATGATAAACAAATAGACGGCATAATTGTAACAGATTCTCCACTTAAGTCGCTGAATGATCCTCTTCTGCCTGGTGTTGAAGATAATGAATCCGATGCCGGAGGATCGAACATTCCCCGTCCTACCAGCTTACGTATGATGTTGACAACTCCAACTCGTTCTGTCCATTACTATTGGCGGATGTTCGATGATCGATATATGCGTCCTGTTTTTGGTGGAAGAGGCTTTGTACCTTTCATCCCCGGTTCACCAACTGAAAAGATACTTCCGCCAAGAACTCCGTCAACATTTGGATTCCTTCCACTGCAAGTGATCTTCTTTTCGGAATTTACAAGACTGAGCTCTTGGCTTCATGGATCCAATGGCTTTTCTGTCGCAATTGGGGCTGAAAGCAGACCGGGAAGCGGCTCACTTCACGGAATTTTCACTGGAATTATCGTTCTCCTAACGACTAGAGGAAAAAGTTCTCACATCCTAGAATTCAATGAACAGCTTTTCTTCATTTACCTTCTTCCACCCATAATATTTAATGCTGGGTTTCAGGTGAAGAAGAAACAGTTCTTTCGCAACTTTCTGGCAATCTTATTGTTTGGTGCTTTTGGAAGTGTGATATCATTCTTCATCATATCACTAGCACTCGGAGCAATCTTAACAGCGACAGATAGTGTTTGCACCTTGCAAGTTCTTAAACAAGATGAGACACCTTTACTTTATAGTCTGGTCTTTGGGGAAGGTGTGGTCAATGATGCTACCTCTGTGGTACTCTTCAATGCAATCAAGAAATTTGACCTCTCTCACATCACTTCAACAAATGCCATTCGGTTAGCTGGAAGTTTCTTAGGTTTGTTCTTGGGAAGCACACTACTGGGAATTGCATTGTTGCTTCTTAGTGGTATTCTTAGCGTGTTCTTTTGTGGGATTGTCATGTCTCACTACACATCTTGGAATAATAGGACTGACAGTACCAATAATGGGATTGGCAGTTCCAGACTAATACCACGCCATGCTTTTGCGACATTATCTTTCGTAGCAGAGATCTTCATCTTCCTTTATGTTGGTATGGATGCATTGGATATTGAGAAGTGGAATGTTGTTAGAGAAAGGCCTGGGAAATCAGTTGGAGCAAGTCTTATACTGCTAGGCCTTGTTCTTGTTGGAAGAGCAGCTTTTGTATTCCCACTCTCTTTCGTTTCCAACTTGACCAGAAAGCACAAAAAAGACCATATTGGGTTTAAACAACAGTTTACGATTTGGTGGGCTGGGCTCATGAGAGGTGCTGTATCAGTGGCACTTGCCTATCATCAGTTTGCAAGGTCAGAAGAAAAGGAACAAGGGGCTTCGATAATGATAACTAGCACCATCATAATTGTTCTCTTCACAAACGTGGTGTTTGGATTGTTGACCAAGTCCATAGTAAGACGAATGATTCCTCGAATTAACCACGAGTCAAGACATTTATATTTTCCCTTACTTCAAGAAATGAGTGATTCGTTGCTTGATGAGAATGATATTGAATCCGACACCAACGAACTTAACCAACTTCCTCCAGACAGTTTCCTGTCGTTTATGAAATCTCCAACTCAATGTCTCCATTATTATTGGTACAAGTTTGATGATTGCTTCATGCGTCCTGTTTTTGGAGGGAGTGAATCTTCATTGGAGCATCTCACTCCCTCAGCTTCTCCCTGA | 3255 | 41.41 | MVAGDDEHFRHEPQQYDLRFRVEQISTWVVVAMKNIFLSLPFDSSLLDSSLLDSSSLDSFGGRDKCALRTCPVFDHFMESYIGNTVMKLALKADPEEHRVALFVLLLCACIVIGHLLEKSRWINESVTAIFIGLFTGTLILLTTKGTNSRILVFSEELFFTYVLPPIIFNAGFQVKKKQFFRNFITIMLFGAVGTVISFFIISLGSLHLFKKFGIGFLDVGDYFALGAILSATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVFFKAIQRFDLSHMTSSNGIQLLGNFFYLFFTSTLLGAIVGLSSAYIIKKLYFARHSTDREVALMILMPYLSYMTAELCNLSGILTMFFCGIVMSHYTWHNVTESSRVTTKHTFATFSFVSEIFIFLYVGMDALDIEKWKVVGQRPWTSAGVSLILLGLVLVARAAFVFPLSFISNLTRKSQTDKIGFKQQVTIWWAGLMRGAVSVALAYNQFTRSGHTQLQGNAIMITSTITIVLITNVVFGLLTKPIVRYMLSLHDKQIDGIIVTDSPLKSLNDPLLPGVEDNESDAGGSNIPRPTSLRMMLTTPTRSVHYYWRMFDDRYMRPVFGGRGFVPFIPGSPTEKILPPRTPSTFGFLPLQVIFFSEFTRLSSWLHGSNGFSVAIGAESRPGSGSLHGIFTGIIVLLTTRGKSSHILEFNEQLFFIYLLPPIIFNAGFQVKKKQFFRNFLAILLFGAFGSVISFFIISLALGAILTATDSVCTLQVLKQDETPLLYSLVFGEGVVNDATSVVLFNAIKKFDLSHITSTNAIRLAGSFLGLFLGSTLLGIALLLLSGILSVFFCGIVMSHYTSWNNRTDSTNNGIGSSRLIPRHAFATLSFVAEIFIFLYVGMDALDIEKWNVVRERPGKSVGASLILLGLVLVGRAAFVFPLSFVSNLTRKHKKDHIGFKQQFTIWWAGLMRGAVSVALAYHQFARSEEKEQGASIMITSTIIIVLFTNVVFGLLTKSIVRRMIPRINHESRHLYFPLLQEMSDSLLDENDIESDTNELNQLPPDSFLSFMKSPTQCLHYYWYKFDDCFMRPVFGGSESSLEHLTPSASP | 1084 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 5424075 | 5443219 | + | ClG42_09g0063200.10 | Clacu09g0632 | 256940 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu09g0632 | 1084 | PANTHER | SODIUM/HYDROGEN EXCHANGER | 93 | 603 | IPR018422 | GO:0005886(PANTHER)|GO:0006812(InterPro)|GO:0015385(PANTHER)|GO:0015385(InterPro)|GO:0015386(PANTHER)|GO:0016020(InterPro)|GO:0051453(PANTHER)|GO:0071805(PANTHER)|GO:0098719(PANTHER)|GO:1902600(InterPro) | |
| Clacu09g0632 | 1084 | Gene3D | - | 731 | 780 | - | - | |
| Clacu09g0632 | 1084 | Gene3D | - | 220 | 271 | - | - | |
| Clacu09g0632 | 1084 | NCBIfam | sodium/hydrogen exchanger 3 | 99 | 550 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Clacu09g0632 | 1084 | PRINTS | Na+/H+ exchanger signature | 187 | 195 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Clacu09g0632 | 1084 | PRINTS | Na+/H+ exchanger signature | 227 | 237 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Clacu09g0632 | 1084 | PRINTS | Na+/H+ exchanger signature | 172 | 186 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Clacu09g0632 | 1084 | PRINTS | Na+/H+ exchanger signature | 158 | 169 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Clacu09g0632 | 1084 | Pfam | Sodium/hydrogen exchanger family | 109 | 517 | IPR006153 | GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro) | |
| Clacu09g0632 | 1084 | Pfam | Sodium/hydrogen exchanger family | 663 | 815 | IPR006153 | GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro) | |
| Clacu09g0632 | 1084 | Pfam | Sodium/hydrogen exchanger family | 817 | 995 | IPR006153 | GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu03g1685 | Clacu-Chr3:30627569 | Clacu09g0632 | Clacu-Chr9:5424075 | 5.20E-200 | dispersed | |
| Clacu09g0632 | Clacu-Chr9:5424075 | Clacu09g2119 | Clacu-Chr9:35961608 | 6.40E-158 | dispersed | |
| Clacu06g0532 | Clacu-Chr6:6078624 | Clacu09g0632 | Clacu-Chr9:5424075 | 3.20E-198 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu09g0632 | - | - | - | 0.0 |