Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g0656 ATGTCCCTTTCTCCCCATCTTTTGCTCCTTCTTCTCACTATAGCATCCCTTTCTGCCGCCGCCGACGCCGTTGAATGCCCTCTCAATTTCACCGTCCTTCGCCAGTTCTCCCAGGGCTCCGCCGTTTCCCGCCCCGATTTCTCCGACGAATGTCAATACATCCGCCTCGGTCTCCGCCTCGTCCTCTCGCAGTACCTCAAACTCACCGGCTCCTTCTTGCCCCCGGTGAACTCTTCCGATTCATGCTGGAATTCTTACCAATCGATAGTGGATGTCACATGGCCGAATTTCGACATTCGGAGCTCTTGCGGGTTTCAAACCGGGTGGATCTCACAGGGCTGTATGAACATCAGGACCAAATCCGAGTTCGAGAGAATCGTTCCTAAATCGGCCCTCGATGGTGTTGTTGCGAACTGTAATCAATCGCTTGAGAATGGTTCCCCCTGTGCCTCGTGCACGACCAGGCTCGCGATCGTTCAGGCCTCGTTCTTGACCGGTCCGTCGATCGGCAATGTCACCGATTGCCCCGCATATCCGTCGATCTACGTGGCGGCGTTTGTAAATCAGTTCGGACCGACCGATTGGGGAACTGCCAAATGCTTATTCTCGCTCCATCCCCTTTCGTCGGGGGATTCGAGGAGCAAGAAGCGGAATACGGTGGTGTTAGTGGTTTTAATTTGCTGTGGCGTTGCGGCAGCAGCGGTGGCGGTTGCAGGCGGGTTGTTTTTCTGGCGGAAACAGGGGAAAGTGAAGAAGAACGATAGAATTGGTAGAGTTGAGACAGGGTTGGGTTCTGGATTGGAGTCGATAAGTGCAAGCACTACTTTGGTGAAGTTCACATTCGATGAAATCAAGAGGGCGACAAGGAATTTTTCTAGAGATAACATAATTGGGAGAGGGGGTTATGGAAATGTGTATAAAGGGGTTCTATCAGATGATTCTGAAGTTGCATTGAAGAGGTTTAAGAACTGTTCTGCAGCAGGGGACGCCATTTTTGCTCATGAAGTGGAGGTAATTTCAAGTGTCAGGCATGTTAATCTTGTTGCTTTAAGAGGATATTGTATTGCAACTACACCAATGGAGGGTCACCAGAGAATAATTGTGTGTGATCTGATGAAGAATGGGAGTCTTTATGACCATTTGTTTGGGTTTTCAGATAAGAGGTTGAGTTGGCCAATTAGGCAAAAGATTGCTCTTGGCACAGCTAGGGGATTGGCTTATCTGCATTATGGAGCTCAGCCTGCCATTATCCATAGAGATATCAAAGCCAGCAACATTCTTTTGGATGAAAACTTTGATCCCAAGGTTGCTGACTTTGGTTTAGCCAAGTTCACTCCAGAAGGAATGACTCATTTGAGCACAAGAGTTGCTGGAACTATGGGGTATGTGGCGCCCGAGTACGCTTTATACGGCCAGTTGACGGAGAGGAGTGATGTGTATAGCTTTGGAGTTGTTTTGCTCGAGCTTTTGAGTGGGAGGAAGGCACTCGGGGTGAGGAGCCATGACAGCCAGCCCTTTCTAGTGACTGATTGGGCTTGGTCTTTGGTTAGGGAACAAAAAGCAATGGATGTTATTGAAGAAGGCATGCCAGAGCTGGGTTCTCCAGAGGTTGTTGAGAAGTATGTATTGATTGCTGTTCTTTGTTCCCATCCCCAGCTCTATGCCAGGCCAACAATGGATCAAGTTGTGAAAATGTTGGAAACTGAGCTCTCTGTTCCTTCAATCCCGGAGAGACCCATCCCTCTAGTTGCTGATATTGATGAAATTGAGAGATCTATGAGTAGTAGTGGTTCGGCTCAGCATTCTGGTTCAGTTGGCTTTCATAGTTTCACATTACAAAATGACCATAGGTAG 1854 48.49 MSLSPHLLLLLLTIASLSAAADAVECPLNFTVLRQFSQGSAVSRPDFSDECQYIRLGLRLVLSQYLKLTGSFLPPVNSSDSCWNSYQSIVDVTWPNFDIRSSCGFQTGWISQGCMNIRTKSEFERIVPKSALDGVVANCNQSLENGSPCASCTTRLAIVQASFLTGPSIGNVTDCPAYPSIYVAAFVNQFGPTDWGTAKCLFSLHPLSSGDSRSKKRNTVVLVVLICCGVAAAAVAVAGGLFFWRKQGKVKKNDRIGRVETGLGSGLESISASTTLVKFTFDEIKRATRNFSRDNIIGRGGYGNVYKGVLSDDSEVALKRFKNCSAAGDAIFAHEVEVISSVRHVNLVALRGYCIATTPMEGHQRIIVCDLMKNGSLYDHLFGFSDKRLSWPIRQKIALGTARGLAYLHYGAQPAIIHRDIKASNILLDENFDPKVADFGLAKFTPEGMTHLSTRVAGTMGYVAPEYALYGQLTERSDVYSFGVVLLELLSGRKALGVRSHDSQPFLVTDWAWSLVREQKAMDVIEEGMPELGSPEVVEKYVLIAVLCSHPQLYARPTMDQVVKMLETELSVPSIPERPIPLVADIDEIERSMSSSGSAQHSGSVGFHSFTLQNDHR 617
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5684249 5686102 + ClG42_09g0065600.10 Clacu09g0656 256964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g0656 617 Pfam SPARK 23 175 IPR043891 -
Clacu09g0656 617 MobiDBLite consensus disorder prediction 591 611 - -
Clacu09g0656 617 MobiDBLite consensus disorder prediction 591 617 - -
Clacu09g0656 617 Gene3D Transferase(Phosphotransferase) domain 1 372 581 - -
Clacu09g0656 617 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 252 370 - -
Clacu09g0656 617 PANTHER OS01G0750732 PROTEIN 49 594 IPR050885 -
Clacu09g0656 617 CDD STKc_IRAK 297 567 - -
Clacu09g0656 617 SMART serkin_6 291 566 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g0656 617 Gene3D Phosphorylase Kinase; domain 1 263 370 - -
Clacu09g0656 617 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 372 574 - -
Clacu09g0656 617 SUPERFAMILY Protein kinase-like (PK-like) 268 567 IPR011009 -
Clacu09g0656 617 ProSitePatterns Serine/Threonine protein kinases active-site signature. 416 428 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu09g0656 617 Pfam Protein kinase domain 293 511 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g0656 617 ProSiteProfiles Protein kinase domain profile. 291 570 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g0656 617 ProSitePatterns Protein kinases ATP-binding region signature. 297 319 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1120 Clacu-Chr5:10224599 Clacu09g0656 Clacu-Chr9:5684249 4.50E-99 dispersed
Clacu09g0656 Clacu-Chr9:5684249 Clacu10g2164 Clacu-Chr10:34798910 1.20E-73 dispersed
Clacu09g0656 Clacu-Chr9:5684249 Clacu07g1249 Clacu-Chr7:27309843 6.80E-72 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73815 PF00069 Pkinase 7.10E-41 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g0656 - - - 0.0