Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g0665 ATGTTTTGCTGCAGCAATCAATGGAGTCGAGTACAGGCTTCGGAATCTGAAATTGGAATCTGCTATTGCTTGTCGAGGATGCTTCCGTGGGGAGGTCTTAGTTGCTGTTTGAGTGCAGCTGCTCTTTATCTTCTTGGAAGGAGTAGTGGCCGGGATGCGGAGTTACTGAAATCTGCCACGCGGGTCAATCAGTTGAAGGAATTGGCTCAATTGCTTGAGGCAGAATGTCTATTACCTCTGGTTGTTGCAATTTCTGGAAGAGTTAGCTCTGATACACCAATAAATTGCGAATTTAGTGGTTTAAGGGGTGTAATTGTGGAGGAAACGGCAGAACAACACTTTTTAAAGCACAATGATGCAGGATCATGGATTCAGGATTCTGCATTGATGCTCTCCATGAGTAAAGAAGTTCCTTGGTATCTGGATGATGGGACTGGTCGTGCATTTGTGGTAGGAGCTCGAAATGCCACAAATTTTATATTACCAGTAGTGAGTGAGGTTTTTGAAGAGTCTGGCAGATCCCTTATGCGTGGCACTTTAGATTATCTCCAAGGTCTTAAGATGCTTGGAGTTAAGCGAATAGAACGCGTTCTACCTACTGGTACTTCCTTGACTGTTGTTGGTGAGATTTTGGATGAGTCCATGGCCTGGCCACTTCTAGGAGGGGTGTTCTTCCACCCGTATTCGTCTGTTGGCAAGATATCCGTGTTGGAGCCGCATATTCTTGAACGAAAAGGTGTTGGTCCCCATTTGTCTGCCCCTATGGATAGAAGGATGAGAAGATATTTTGTTCAGTCACTCAATGCTGCCAAAGATGACATTGGTACCATCAGAATTCAACGTCCACACAAAGGACCATTTTATGTCTCCCCAAAAACTATCGATCAACTCATAAGCAATCTTGGGAAGTGGGCCAGGTGGTACAAGTATGCTTCCATGGGTTTGGGTATATTTGGTTTGTATCTGGTCACAAAGCATGCTATTCTTTATCTCATGGAGAGAAGGCGTCGCTGGGAATTGCAGAAAAGGGTCCTTGCTGCAGCTGCCAAAAGATCAAGCCAAGAAAATGAAGGGGAAAATGAAAAGGCCAGCAATGGAACAGATGGTACAAAGAGAGACCGGTCAATGCCAGATCTTTGTGTAATATGTCTCGAGAGAGACTACAATGCTGTTTTTGTCCCGTGCGGCCATATGTGCTGCTGTGTAGCATGTTGTTCACATTTAACAAACTGTCCACTCTGTCGTAGACGAATTGAGCTGGTAGTTAAGACTTTCCGCCATTGA 1284 44.78 MFCCSNQWSRVQASESEIGICYCLSRMLPWGGLSCCLSAAALYLLGRSSGRDAELLKSATRVNQLKELAQLLEAECLLPLVVAISGRVSSDTPINCEFSGLRGVIVEETAEQHFLKHNDAGSWIQDSALMLSMSKEVPWYLDDGTGRAFVVGARNATNFILPVVSEVFEESGRSLMRGTLDYLQGLKMLGVKRIERVLPTGTSLTVVGEILDESMAWPLLGGVFFHPYSSVGKISVLEPHILERKGVGPHLSAPMDRRMRRYFVQSLNAAKDDIGTIRIQRPHKGPFYVSPKTIDQLISNLGKWARWYKYASMGLGIFGLYLVTKHAILYLMERRRRWELQKRVLAAAAKRSSQENEGENEKASNGTDGTKRDRSMPDLCVICLERDYNAVFVPCGHMCCCVACCSHLTNCPLCRRRIELVVKTFRH 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5777953 5787574 - ClG42_09g0066500.10 Clacu09g0665 256973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g0665 427 MobiDBLite consensus disorder prediction 351 371 - -
Clacu09g0665 427 MobiDBLite consensus disorder prediction 354 371 - -
Clacu09g0665 427 Pfam E3 Ubiquitin ligase 270 320 IPR022170 GO:0004842(InterPro)|GO:0006996(InterPro)|GO:0016567(InterPro)
Clacu09g0665 427 Pfam E3 Ubiquitin ligase 111 213 IPR022170 GO:0004842(InterPro)|GO:0006996(InterPro)|GO:0016567(InterPro)
Clacu09g0665 427 Pfam Zinc finger, C3HC4 type (RING finger) 378 419 - -
Clacu09g0665 427 SUPERFAMILY RING/U-box 379 421 - -
Clacu09g0665 427 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 347 426 IPR013083 -
Clacu09g0665 427 PANTHER - 27 213 IPR044231 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu09g0665 427 ProSiteProfiles Zinc finger RING-type profile. 380 415 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0707 Clacu-Chr6:8259088 Clacu09g0665 Clacu-Chr9:5777953 4.00E-06 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g0665 K15688 - mdm:103449075 521.546