Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g0722 ATGGATTTAACAAATGGGGGCGAGGCCGGCAACGCTCCAGTAGCTAAGAATTCGAGTCATCAAGTATCTGATATTGTTTCCGGAAAGTCGAGCAATACCCAAGAGAAGGATTTGGGTTCAAAATTGGGGACAGGAAGCAAAAGCAATAGGGATATGGTATTTCGTGCTGATAAGATTGATTTCAAGAGTTGGGATATTCAGCTGGAGAAGCACTTGAGCAGGGCTTGGTCAAGGGACAGGGAAGTGCCTGCTAAAAAGGAAGAATGGGAGATTGACTTGTCTAAACTTGATATCAGATATGTTAAAGCTCATGGAACTTATGGTACTATTTACAGAGGAAGCTATGATGGCAATGATGTTGCAGTGAAAGTGCTTGATTGGGGGGAGGATGGTGTTTCCTCAGTTGCTGAAATTGCTGCTCTTCGAACATCTTTTCGCCAGGAAGTGGCTGTATGGCATAAGCTTGACCATCCCAATGTTGCAAAGTTTTATGGAGCATCAATGGGGACGTCCAACCTTAAAATACCTCCCAAGAGCTCATCATTCGACAGTAACCAATCTTTTCCTTCAAGGGCTTGCTGCGTTGTTGTTGAGTATCTTCCAGGTGGAACACTAAAGAGCTTTTTAATCAAAAATAGGAAAAGGAAACTTGCATTTAAGGTTGTGATTCAACTTGCTTTGGATCTTTCTAGAGGTTTAAGTTATCTACACTCCAAAAAGATTGTACACCGTGATATTAAAACAGAGAATGTGCTGCTAGATGCTCAGAAGACTCTGAAAATTGTTGATTTTGGCGTTGCCCGGGTTGAAGCACAGAACCCAAGGGATATGACTGGAGAGACTGGCACCCTTGGTTACATGGCCCCAGAGGTCCTTGATGGTAAACCTTATAATCGGAAATGTGATGTCTACAGTTTTGGTATATGTTTGTGGGAAACGTATTGCTGCGATATGCCTTACCCAGATCTCAGTTTTGCTGAAGTGTCATCTGCAGTTGTGCGACAGAATTTACGACCGGATATCCCTAGATGCTGCCCGAGTTCGTTCGCAAATATCATGAAAAGATGTTGGGACGCAAATCCAGAAAGGCGACCTGACATGGACGAGGTCGTAAAATTGTTGGAAGCCATTGATACAAGTAAAGGGGGTGGCATGATTACTGAAGATCAGATTAGTTGTTTCTGTTTCCGCAAGCCTCGTGGTCCATAA 1209 43.34 MDLTNGGEAGNAPVAKNSSHQVSDIVSGKSSNTQEKDLGSKLGTGSKSNRDMVFRADKIDFKSWDIQLEKHLSRAWSRDREVPAKKEEWEIDLSKLDIRYVKAHGTYGTIYRGSYDGNDVAVKVLDWGEDGVSSVAEIAALRTSFRQEVAVWHKLDHPNVAKFYGASMGTSNLKIPPKSSSFDSNQSFPSRACCVVVEYLPGGTLKSFLIKNRKRKLAFKVVIQLALDLSRGLSYLHSKKIVHRDIKTENVLLDAQKTLKIVDFGVARVEAQNPRDMTGETGTLGYMAPEVLDGKPYNRKCDVYSFGICLWETYCCDMPYPDLSFAEVSSAVVRQNLRPDIPRCCPSSFANIMKRCWDANPERRPDMDEVVKLLEAIDTSKGGGMITEDQISCFCFRKPRGP 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6264419 6267343 - ClG42_09g0072200.10 Clacu09g0722 257030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g0722 402 Pfam Protein tyrosine and serine/threonine kinase 104 373 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu09g0722 402 CDD STKc_MAP3K-like 103 374 - -
Clacu09g0722 402 MobiDBLite consensus disorder prediction 1 44 - -
Clacu09g0722 402 ProSiteProfiles Protein kinase domain profile. 96 377 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g0722 402 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 45 375 IPR051681 GO:0004674(PANTHER)|GO:0005886(PANTHER)
Clacu09g0722 402 PRINTS Tyrosine kinase catalytic domain signature 235 253 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu09g0722 402 PRINTS Tyrosine kinase catalytic domain signature 197 210 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu09g0722 402 PRINTS Tyrosine kinase catalytic domain signature 301 323 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu09g0722 402 PRINTS Tyrosine kinase catalytic domain signature 345 367 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu09g0722 402 FunFam Kinase suppressor of Ras 1 85 179 - -
Clacu09g0722 402 ProSitePatterns Serine/Threonine protein kinases active-site signature. 241 253 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu09g0722 402 Gene3D Transferase(Phosphotransferase) domain 1 200 391 - -
Clacu09g0722 402 FunFam Serine/threonine-protein kinase HT1 200 385 - -
Clacu09g0722 402 SMART serkin_6 96 377 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g0722 402 SUPERFAMILY Protein kinase-like (PK-like) 78 374 IPR011009 -
Clacu09g0722 402 MobiDBLite consensus disorder prediction 11 44 - -
Clacu09g0722 402 Gene3D Phosphorylase Kinase; domain 1 84 176 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1799 Clacu-Chr6:28476743 Clacu09g0722 Clacu-Chr9:6264419 1.80E-147 dispersed
Clacu09g0722 Clacu-Chr9:6264419 Clacu10g1415 Clacu-Chr10:27302698 2.50E-147 dispersed
Clacu05g0568 Clacu-Chr5:4788853 Clacu09g0722 Clacu-Chr9:6264419 7.50E-161 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73816 PF07714 PK_Tyr_Ser-Thr 1.30E-57 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g0722 - - - 0.0