Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g0733 ATGTTTGCTTCAACAATGTCCAATTCAACTTCTTTGTCTGAAGAAGCTAGTGTCTCTTCTACCACAAGAGTCCACCCTGAATTCACCTGCTTAAACCCTCTCCTTCCATCTTTTTCTGATGTTCACCACCCTCCACAAAAGCTCAAGAAGAAACGAAGCCTCCCCGGTAACCCAGACCCGGATGCGGAAGTGATAGCGCTTTCGCCGAAAACACTACTAGCAACAAATAGATTTGTGTGTGAGATTTGCAACAAGGGTTTCCAAAGGGATCAAAATTTGCAGTTGCATAGGAGAGGGCACAATTTACCATGGAAATTGAAGCAAAGAAACAGCAAAGAAGTGAAGAAGAAAGCCTATGTTTGTCCAGAACCAAGTTGTGTTCATCATCATCCTTCAAGAGCATTAGGAGATCTCACAGGAATCAAAAAACATTACTGCAGAAAACATGGTGAAAAGAAATGGAAATGTGATAAATGCTCCAAAGTTTATGCTGTTCAATCTGATTGGAAAGCTCACTCCAAAACTTGTGGCACTAGGGAATATAGATGTGATTGTGGAACCCTTTTCTCCAGGAAGGATAGCTTCATAACCCATAGAGCTTTTTGTGATGCATTGGCTGAAGAAAGTGCAAGGCTCTCAGCTAACCAATTGGCCATGGCTGCCGCTGCTGCCGCTGCCTCCGGTGCCACTGATATCAACATAAACTCATCTTCAACCACCGCCGCCGACCAGTCGCTCTTTCCTTATGGTAATCACCATCAATTCTCGAACTCGACACTATCACTACCACCACCTCCACCTCTGTCTCAAACCCACATGTCTTTAAACCCTTGGGATCATCCCCAAAACCCTAACCCTAATCACACCCTCCAAATCATTAAGCCAGAGGATTCAAATTCTCATTCTTCCCATTCTCATAATTTTCACCAAATTCCAAATTTGCCCCTCTCCAATTCCTCCTCTGCCAACAACCCTTTTGGTCTAATTCAAGACCACCACCACCAAAAGGTAGGCTCATCCTCCTCCTCTTCCATGATAACCTCACCCTTCAGGAACCTCCACGTGTCAGTGCACCCGGGATCAAATGTTGCCACGTCAGCTCACCTATCAGCAACAGCCCTACTCCAAAAGGCAGCGACAGTTGGCGTTGGCGCTGCAAAATCCGGTCACCATCAACCCGAGTCAGTAGGCCACATGACTCACTTCAACATGCAAAACATCCCCGAGTTCGGTCCACCGAATCACATTGAATCACTGAGTCAACTTGATCCTGACTATGCCACGTGGCAGAAGACTGACCGGCTGACCAGGGACTTTCTCGGTCTGACTGGAGATGGGAACAGTGGCGTTGGTAGTGGTGGTGGTTCTGGCGGCAGTGGAGTGGTGCAAGTTAGCATGAGCGTTAAGGATATGCTAACGTACGCAAGTGGATTGGAGATGTTTAAGCCTCATAACAATAATAATAGTAGTAATAATAATTTTGGATATGCGGAGCCAGCTGCCAATGAAACTTGGGGAGATTGTTGA 1527 46.1 MFASTMSNSTSLSEEASVSSTTRVHPEFTCLNPLLPSFSDVHHPPQKLKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVKKKAYVCPEPSCVHHHPSRALGDLTGIKKHYCRKHGEKKWKCDKCSKVYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLAMAAAAAAASGATDININSSSTTAADQSLFPYGNHHQFSNSTLSLPPPPPLSQTHMSLNPWDHPQNPNPNHTLQIIKPEDSNSHSSHSHNFHQIPNLPLSNSSSANNPFGLIQDHHHQKVGSSSSSSMITSPFRNLHVSVHPGSNVATSAHLSATALLQKAATVGVGAAKSGHHQPESVGHMTHFNMQNIPEFGPPNHIESLSQLDPDYATWQKTDRLTRDFLGLTGDGNSGVGSGGGSGGSGVVQVSMSVKDMLTYASGLEMFKPHNNNNSSNNNFGYAEPAANETWGDC 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6411890 6415162 + ClG42_09g0073300.10 Clacu09g0733 257041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g0733 508 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 100 IPR013087 -
Clacu09g0733 508 FunFam protein indeterminate-domain 12-like 57 125 - -
Clacu09g0733 508 Gene3D Classic Zinc Finger 57 126 - -
Clacu09g0733 508 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 43 448 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Clacu09g0733 508 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 115 149 - -
Clacu09g0733 508 MobiDBLite consensus disorder prediction 256 328 - -
Clacu09g0733 508 ProSitePatterns Zinc finger C2H2 type domain signature. 80 100 IPR013087 -
Clacu09g0733 508 Gene3D Classic Zinc Finger 147 212 - -
Clacu09g0733 508 Pfam Zinc finger, C2H2 type 78 100 IPR013087 -
Clacu09g0733 508 MobiDBLite consensus disorder prediction 41 62 - -
Clacu09g0733 508 FunFam protein indeterminate-domain 5, chloroplastic-like 132 211 - -
Clacu09g0733 508 SMART c2h2final6 154 174 IPR013087 -
Clacu09g0733 508 SMART c2h2final6 78 100 IPR013087 -
Clacu09g0733 508 SMART c2h2final6 119 149 IPR013087 -
Clacu09g0733 508 MobiDBLite consensus disorder prediction 272 328 - -
Clacu09g0733 508 MobiDBLite consensus disorder prediction 486 508 - -
Clacu09g0733 508 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 153 177 - -
Clacu09g0733 508 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 180 218 - -
Clacu09g0733 508 SUPERFAMILY beta-beta-alpha zinc fingers 77 174 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1062 Clacu-Chr2:18229211 Clacu09g0733 Clacu-Chr9:6411890 6.20E-88 dispersed
Clacu05g1952 Clacu-Chr5:28679428 Clacu09g0733 Clacu-Chr9:6411890 1.00E-84 dispersed
Clacu07g1377 Clacu-Chr7:28597944 Clacu09g0733 Clacu-Chr9:6411890 4.30E-30 dispersed
Clacu09g0608 Clacu-Chr9:5230313 Clacu09g0733 Clacu-Chr9:6411890 2.40E-80 dispersed
Clacu09g0733 Clacu-Chr9:6411890 Clacu10g2010 Clacu-Chr10:33578026 6.40E-84 dispersed
Clacu09g0733 Clacu-Chr9:6411890 Clacu01g2001 Clacu-Chr1:31947302 3.30E-88 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48306 PF00096 zf-C2H2 0.0051 CL0361 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g0733 K25870 - csv:101208253 786.949