Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g0742 ATGGCGAACAATCATTCCGATACTCCGGCTGATGATTTCCTCGAGCAGATTCTTGGGATTTCCCCTTTTGGTTCATCGGACCAAGGGTTAGCTGGAACTGACGGCGGATTGGCCGGAGCTGCTGCTGCTGCGGCAGCGGCGGCGGCTCAGGGTCAGGCTCCGATGATGCTTCAGCTTAGCTCCGGCGACGGTGGTGGTCATATCGCTACGATTGGGAGTGGTAGTGTCGGTGGAGCTGGGTTTCATGGCGGACCCCCTTTTCCTCTGGGGTTGAGCTTGGACCAAGGGAAGAGTGGGTTTCTTAAGGCTGAGGAAGCCTCTGGAAGTGGAAAGCGGTATTGTGGTGATGTTGTTGATGTTCGAGCTTCGTCTGTAAAAAATGTTTTTCAAGGCCAACAAATGCATGCTACTATGGGTGCAGCCCCACATCCACCAGCAATGCGCCCTAGGGTACGTGCAAGACGAGGACAGGCGACTGATCCACATAGCATTGCAGAGCGGTTACGAAGAGAAAGGATTGCAGAGAGAATTAGGGCTTTGCAGGAGCTTGTTCCGAGTGTCAATAAGACGGATAGAGCTGCAATGCTCGATGAAATAGTGGACTACGTAAAGTTCCTACGTCTCCAAGTGAAGGTTCTGAGCATGAGTAGATTGGGTGGAGCTGGTGCTGTGGCACCACTTGTAACGGATATTCCACTATCATCAGTTGAGGAAGAAGGAAGTGAAGGTGGTAGGAACCAACCGGCATGGGAGAAGTGGTCGAACGATGGTACAGAGAGACAAGTTGCTAAACTCATGGAAGAAAATGTGGGAGCCGCAATGCAATTCCTTCAATCAAAGGCACTCTGCATCATGCCCATCTCGTTGGCTTCAGCGATTTATCACACGCAACCACCTGATAGCTCGAGCGTTGTGAAGCCAGAGAGTAACCCTCCTCCATAG 942 51.8 MANNHSDTPADDFLEQILGISPFGSSDQGLAGTDGGLAGAAAAAAAAAAQGQAPMMLQLSSGDGGGHIATIGSGSVGGAGFHGGPPFPLGLSLDQGKSGFLKAEEASGSGKRYCGDVVDVRASSVKNVFQGQQMHATMGAAPHPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGSEGGRNQPAWEKWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYHTQPPDSSSVVKPESNPPP 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6559834 6562795 + ClG42_09g0074200.10 Clacu09g0742 257050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g0742 313 Gene3D - 152 214 IPR036638 GO:0046983(InterPro)
Clacu09g0742 313 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 155 216 IPR036638 GO:0046983(InterPro)
Clacu09g0742 313 Pfam Helix-loop-helix DNA-binding domain 162 207 IPR011598 GO:0046983(InterPro)
Clacu09g0742 313 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 98 292 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Clacu09g0742 313 FunFam Basic helix-loop-helix transcription factor 152 214 - -
Clacu09g0742 313 MobiDBLite consensus disorder prediction 138 161 - -
Clacu09g0742 313 MobiDBLite consensus disorder prediction 237 256 - -
Clacu09g0742 313 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 157 206 IPR011598 GO:0046983(InterPro)
Clacu09g0742 313 SMART finulus 163 212 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1748 Clacu-Chr2:31013676 Clacu09g0742 Clacu-Chr9:6559834 6.00E-43 dispersed
Clacu06g1311 Clacu-Chr6:24045031 Clacu09g0742 Clacu-Chr9:6559834 1.50E-46 dispersed
Clacu07g0017 Clacu-Chr7:558946 Clacu09g0742 Clacu-Chr9:6559834 2.90E-17 dispersed
Clacu09g0742 Clacu-Chr9:6559834 Clacu09g0843 Clacu-Chr9:7767241 3.00E-15 dispersed
Clacu09g0742 Clacu-Chr9:6559834 Clacu03g1677 Clacu-Chr3:30539993 2.10E-53 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48308 PF00010 HLH 1.20E-07 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g0742 - - - 0.0