Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g0752 ATGGATGGATTGATGATGAAGATGATGGAAGAGGTCGAAGAAGCTAATAGGGAAGCTGTTGAGAGTTGTCATAAAGTGTTGAATCTCTTGACTGTGGCTTCCTCGTCTCAAGATCAGTTGAAGCTTAGGAGTCGTTTAATGGCGGAAACTGGAGACGCTGTGTTTAAGTTTAGGAAAGTTTTGTGTCTTCTTGATTCTTCTGGGTTGGGTCATGCAAGGGTCAGGAAAAAGAAGGTCAAGAACTTTTTGTTTAATTCCTCTTCTTCCCCTTTTCCTCTTCCCCAATCTTTGTTCTTAGAAACTTCTTCCCCTAATTGCAGAATGGACCTTCTCCAGGGCAGGAATTTGCAGATGGGTCCTCTTTGTTTGGGGAACCCATCTTTGGAATTGAACTCTAATGCCAAAAGTTGTTCAACCCAACAAATACAATCTCAATCTGCTGCTCTTTATCATCATCATCATCATCATCACTTGCTTCAGAACAGGGTGTTGTTGAACAATAATCCTAATCCTAATCCTCCACAGCCTGAAATGATGTATCTTAGGAGCAATAATGGCATTAACTTAAATTTTGATAGCTCTAGTTGCACACAACACACAATGTCATCCACTAGGTCGTTTATATCTTCCTTGAGCATTGATGGGAGTGTGGCTAGCTTGGATGGGAGTGCCTTTCATTTGATCGGGGCACCCCGGTCTTCCGATCAGAATTCGCATTCTAAGAGGAAGTGCAGTGGGAGAGGGGAAGATGGGAGTGTTAAATGTGGAAGCAGTGGGAGATGTCACTGCTCAAAAAAGAGGAAACATAGAGTAAAGCGATCAATTAAGGTGCCCGCGATAAGTAACAAGCTTGCAGATATCCCTCCTGATGATTATTCATGGAGGAAATATGGCCAAAAGCCAATCAAGGGTTCACCTCACCCAAGAGGATACTATAAGTGCAGCAGCATGAGAGGCTGTCCAGCGAGGAAGCACGTCGAGCGGTGTCTCGAGGAACCTTCCATGCTCATTGTTACATATGAAGGTGAACACAACCATCCTAGAATACCTTCTCAACCTGCAAATACTTGA 1071 43.51 MDGLMMKMMEEVEEANREAVESCHKVLNLLTVASSSQDQLKLRSRLMAETGDAVFKFRKVLCLLDSSGLGHARVRKKKVKNFLFNSSSSPFPLPQSLFLETSSPNCRMDLLQGRNLQMGPLCLGNPSLELNSNAKSCSTQQIQSQSAALYHHHHHHHLLQNRVLLNNNPNPNPPQPEMMYLRSNNGINLNFDSSSCTQHTMSSTRSFISSLSIDGSVASLDGSAFHLIGAPRSSDQNSHSKRKCSGRGEDGSVKCGSSGRCHCSKKRKHRVKRSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPSMLIVTYEGEHNHPRIPSQPANT 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6696295 6698275 - ClG42_09g0075200.10 Clacu09g0752 257060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g0752 356 SMART WRKY_cls 288 348 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu09g0752 356 Pfam WRKY DNA -binding domain 290 347 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu09g0752 356 Gene3D WRKY domain 273 350 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu09g0752 356 SUPERFAMILY WRKY DNA-binding domain 286 348 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu09g0752 356 MobiDBLite consensus disorder prediction 229 256 - -
Clacu09g0752 356 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 7 352 IPR044810 GO:0003700(InterPro)
Clacu09g0752 356 FunFam WRKY transcription factor 65 272 349 - -
Clacu09g0752 356 ProSiteProfiles WRKY domain profile. 283 349 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu09g0752 356 Pfam Plant zinc cluster domain 241 286 IPR018872 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2214 Clacu-Chr5:30691928 Clacu09g0752 Clacu-Chr9:6696295 8.70E-49 dispersed
Clacu08g1529 Clacu-Chr8:25194551 Clacu09g0752 Clacu-Chr9:6696295 2.40E-17 dispersed
Clacu09g0752 Clacu-Chr9:6696295 Clacu10g1144 Clacu-Chr10:24004320 2.20E-22 dispersed
Clacu07g0061 Clacu-Chr7:970766 Clacu09g0752 Clacu-Chr9:6696295 3.30E-100 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48311 PF03106 WRKY 3.60E-26 CL0274 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g0752 - - - 0.0