Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g0767 ATGTCAATTGTTAATGATTTGTTTGGTAATTACCAAGAAGATTTCTTGTGGAACAATAATCAGGATGAAAGTTTAATTTCCGGGGAAGAGAATTATTTCAATTACTTGAAAGAGGTGTTGTTTGATGATATTTTTGAGGAGGCGGCCGGAGGAACGACGTCGTCAGATTCGAGTTCGAGTTCGAGTTCGAGTTCTTGTTCGTCTCCAGTGATGCAAGTTAAGGAGGAGATTGAGGAAGGGAGTTTTGGTGACGACAACGTTGTGCAGGAAGATGAATCACGTAAGGAGGATAGGGTTTATCGAGGGGTGCGAAGGAGGCCGTGGGGGAAGTACGCAGCCGAGATTAGGGATTCGACCCGACAAGGGGTGAGGGTGTGGTTGGGGACGTTTAATAGCGCCGAAGCGGCTGCGTTGGCGTATGACCAAGCCGCATTTTGCATGAGAGGAGGGTTAGCCACGCTTAACTTTCCGGTCGAGGTTGTACGAGAGTCACTCCGAGAGATGAAGTACCGGTGGGAGGCTGGGTGCTCGCCGGTCTTGGCGCTTAAGCGGCGCCACTCGATACGGAGGAAGAAGATGGCTGAGGTGGAGAAGATGGAGAAGAAGATGAAGAAGAAGAAGAAGCAAACTGTAGTTGTTTTTGAGGATTTGGGTGTAGAGTACTTAGAAGAACTCTTAAGTTTGACTTCTTAA 693 47.91 MSIVNDLFGNYQEDFLWNNNQDESLISGEENYFNYLKEVLFDDIFEEAAGGTTSSDSSSSSSSSSCSSPVMQVKEEIEEGSFGDDNVVQEDESRKEDRVYRGVRRRPWGKYAAEIRDSTRQGVRVWLGTFNSAEAAALAYDQAAFCMRGGLATLNFPVEVVRESLREMKYRWEAGCSPVLALKRRHSIRRKKMAEVEKMEKKMKKKKKQTVVVFEDLGVEYLEELLSLTS 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6867740 6868432 + ClG42_09g0076700.10 Clacu09g0767 257075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g0767 230 ProSiteProfiles AP2/ERF domain profile. 99 157 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu09g0767 230 SUPERFAMILY DNA-binding domain 99 159 IPR016177 GO:0003677(InterPro)
Clacu09g0767 230 Coils Coil 189 209 - -
Clacu09g0767 230 MobiDBLite consensus disorder prediction 51 70 - -
Clacu09g0767 230 FunFam Ethylene-responsive transcription factor 2 98 159 - -
Clacu09g0767 230 PRINTS Ethylene responsive element binding protein signature 123 139 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu09g0767 230 PRINTS Ethylene responsive element binding protein signature 100 111 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu09g0767 230 Pfam AP2 domain 99 149 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu09g0767 230 PANTHER DNA-BINDING DOMAIN 55 200 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Clacu09g0767 230 CDD AP2 100 158 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu09g0767 230 SMART rav1_2 99 163 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu09g0767 230 Gene3D AP2/ERF domain 99 160 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0091 Clacu-Chr7:1322399 Clacu09g0767 Clacu-Chr9:6867740 1.30E-41 dispersed
Clacu09g0767 Clacu-Chr9:6867740 Clacu10g0237 Clacu-Chr10:2864190 1.10E-19 dispersed
Clacu09g0766 Clacu-Chr9:6855509 Clacu09g0767 Clacu-Chr9:6867740 5.50E-20 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48314 PF00847 AP2 2.00E-14 CL0081 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g0767 K14516 - csv:101205053 306.219