Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g0792 ATGGATTCGGCGAGGAGTTGGTTTAATAAGCTTCAGCCAAGAGATAGGTTGAGGGGTTCTACGAAGAAGAAGGATAATAGTATGGGAGAGAATGAGGATGGTACTGCTACTGATCAAACGGATGAAGAAGCGCTTTCTAATATTACTAAGCAGAAGGTTGCTGCGGCAAAGCAGTATATTGAGAATCATTACAAGGAGCAAATGAAGAATCTGCAGGAGAGAAAGGAAAGACGAAATATATTGGAAAAGAAGTTGGCTGATGCTGATGTTTCTGAAGAAGATCAAAACAATTTACTTAAGTTCTTAGAGAAGAAGGAAACTGAATACATGCGCCTCCAAAGGCACAAAATGGGTGTTGATGATTTCGATTTACTAACAATTATTGGCAAAGGTGCTTTTGGGGAGGTTCGTGTTTGTAGAGAGAAGACTACAGGTCAGGTGTATGCTATGAAAAAGCTTAAAAAATCAGAGATGCTTCGAAGGGGCCAGGTGGAGCATGTGAGAGCTGAAAGAAATCTGCTTGCTGAAGTAGACAGCAACTGTATTGTGAAACTCTATTGTTCTTTTCAAGATGATGAGTTTCTTTATCTTATTATGGAGTACCTACCTGGTGGAGATATGATGACTTTATTGATGAGAAAGGATACTTTGACTGAAGATGAAGCAAGGTTTTACGTTGGAGAGATAGTTTTGGCTATTGAATCTATTCATAAGCACAATTACATTCATAGAGATATTAAGCCTGACAATTTGCTGCTTGATAAATTTGGGCACTTGAGACTCTCAGACTTTGGACTATGCAAACCGTTAGATTGCAGTACACTCCAAGAACAAGATTTTGATGTAGGGAGTGTCCGTAATGGAGCTGGACAAAGTGATGAGCGCAATGCAACTCCCCGTACTCAACAAGAGCAACTACAACATTGGCAGAAGAATCGAAGAATGCTTGCTTATTCAACAGTTGGAACACCAGATTATATTGCTCCAGAGGTTTTGTTGAAGAAAGGTTATGGCATGGAATGTGACTGGTGGTCACTTGGAGCTATTATGTATGAAATGCTTGTTGGCTACCCACCTTTTTACTCTGATGATCCAATGTCGACATGTCGGAAGATTGTGAACTGGAGAACTCATTTGAAGTTCCCTGACGAGGCAAAGCTGTCTCCCTTGGCAAAAGATCTCATCAGCAGACTACTATGCAATGTTAACCAGAGGCTTGGTACAAATGGCGCAGATGAAATTAAGGTTCATCCGTGGTTTGAAGGTACTGAATGGGATAGGCTATACCAAATGGAAGCTGCATTTGTTCCTGAGGTTAAAGATGAGCTAGACACTCAAAATTTCGAAAAGTTTGAAGAGTCTGACTCGCAAAGCAGTACTTCATCTAAAACTGGTCCATGGAGAAAGATGCTTTCATCGAAGGACATCAACTTCGTTGGATATACTTACAAGAACTTCGAAATTGTCAACGATTATCAATTGCCTGGGATGGCTGAATTGAAGAAAAAATGCAGCAAACCCAAAAGACCGTCAATCAAGTCACTCTTTGATGGCGAGTCGGAGGCAGCAGACACATCTGATACACACACACCTACTCATAGTCAGCAGAAGACTGAAGGTAGCTTTTCGAACTCAACAACATCTCCTAAACTGGATGAAGTTGAAATGGGGAAAGAGTCGATGTAA 1686 40.81 MDSARSWFNKLQPRDRLRGSTKKKDNSMGENEDGTATDQTDEEALSNITKQKVAAAKQYIENHYKEQMKNLQERKERRNILEKKLADADVSEEDQNNLLKFLEKKETEYMRLQRHKMGVDDFDLLTIIGKGAFGEVRVCREKTTGQVYAMKKLKKSEMLRRGQVEHVRAERNLLAEVDSNCIVKLYCSFQDDEFLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGEIVLAIESIHKHNYIHRDIKPDNLLLDKFGHLRLSDFGLCKPLDCSTLQEQDFDVGSVRNGAGQSDERNATPRTQQEQLQHWQKNRRMLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMSTCRKIVNWRTHLKFPDEAKLSPLAKDLISRLLCNVNQRLGTNGADEIKVHPWFEGTEWDRLYQMEAAFVPEVKDELDTQNFEKFEESDSQSSTSSKTGPWRKMLSSKDINFVGYTYKNFEIVNDYQLPGMAELKKKCSKPKRPSIKSLFDGESEAADTSDTHTPTHSQQKTEGSFSNSTTSPKLDEVEMGKESM 561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7112060 7120709 + ClG42_09g0079200.10 Clacu09g0792 257100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g0792 561 ProSitePatterns Protein kinases ATP-binding region signature. 128 151 IPR017441 GO:0005524(InterPro)
Clacu09g0792 561 Pfam Protein kinase C terminal domain 439 483 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g0792 561 Pfam Protein kinase domain 317 420 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g0792 561 Pfam Protein kinase domain 124 273 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g0792 561 MobiDBLite consensus disorder prediction 289 303 - -
Clacu09g0792 561 ProSiteProfiles Protein kinase domain profile. 122 420 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g0792 561 CDD MobB_NDR_LATS-like 56 117 - -
Clacu09g0792 561 SMART serkin_6 122 420 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g0792 561 MobiDBLite consensus disorder prediction 1 46 - -
Clacu09g0792 561 Coils Coil 64 84 - -
Clacu09g0792 561 ProSitePatterns Serine/Threonine protein kinases active-site signature. 241 253 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu09g0792 561 FunFam Non-specific serine/threonine protein kinase 319 438 - -
Clacu09g0792 561 SMART pkinase_C_6 421 485 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g0792 561 PANTHER SERINE/THREONINE-PROTEIN KINASE 35 488 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Clacu09g0792 561 MobiDBLite consensus disorder prediction 527 551 - -
Clacu09g0792 561 CDD STKc_NDR_like 120 484 - -
Clacu09g0792 561 MobiDBLite consensus disorder prediction 503 561 - -
Clacu09g0792 561 FunFam Non-specific serine/threonine protein kinase 206 273 - -
Clacu09g0792 561 ProSiteProfiles AGC-kinase C-terminal domain profile. 421 493 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu09g0792 561 FunFam Non-specific serine/threonine protein kinase 93 205 - -
Clacu09g0792 561 Gene3D Phosphorylase Kinase; domain 1 120 205 - -
Clacu09g0792 561 Gene3D Phosphorylase Kinase; domain 1 439 449 - -
Clacu09g0792 561 SUPERFAMILY Protein kinase-like (PK-like) 95 473 IPR011009 -
Clacu09g0792 561 MobiDBLite consensus disorder prediction 283 303 - -
Clacu09g0792 561 Gene3D Transferase(Phosphotransferase) domain 1 206 272 - -
Clacu09g0792 561 Gene3D Transferase(Phosphotransferase) domain 1 319 438 - -
Clacu09g0792 561 MobiDBLite consensus disorder prediction 503 526 - -
Clacu09g0792 561 MobiDBLite consensus disorder prediction 9 31 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0711 Clacu-Chr6:8302975 Clacu09g0792 Clacu-Chr9:7112060 1.40E-242 dispersed
Clacu08g1755 Clacu-Chr8:26969934 Clacu09g0792 Clacu-Chr9:7112060 9.00E-174 dispersed
Clacu09g0792 Clacu-Chr9:7112060 Clacu10g1374 Clacu-Chr10:26810597 5.30E-39 dispersed
Clacu09g0792 Clacu-Chr9:7112060 Clacu03g1579 Clacu-Chr3:29358800 2.70E-184 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73819 PF00069 Pkinase 1.10E-63 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g0792 K08790 - csv:101221720 1065.83