Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g0795 ATGGAACAATCGACAGTTCTGTGTTCTACTTTTGCTGTTGTGAACAATTGTTCCATTGTTTGCTTTCTCGGTTTCTCCGACAGATTCAGAAACCCTAGCTCCGGCTTTAAGTTCTTCAGCGTTTTCAAACTCAACTTCATCTCCAAACCACCTTATCTCCATCCAAATTCTCTACCCTCTTCCCATTTGAAGTTTCACAGTCTTCATTACAGCCTCTCCTTAATCAGGGCTTGTAGACAGAGACCATGGATACTATTTGACCAAAACAAGGAGGATTCTTTGGAGTTCGAATCTATGGAGCAGAACCTCCCTCCACAATCTGACCTTTCAAAAGGGGTAGCTCATGGATGTCCAGAATGCAGTGACTGTCTGAAGGTCACTGCAAGGTGGCGGCCAGACGATGCAAGATCAGATATTCTTGAAGAGGCTGCTGTTTTTTATCCAACAGAGGAGGAATTTGCAGATACACTTCATTATATAGAAAGAATACGTTCAAGAGCAGAGTCAAGTGGAATCTGTCGCATAGTTCCTCCTCCATCATGGTTGCCTCCATGTCTTTTGAAGGGAAAGGAAACTTGGGAAAATTCTCCTTTCCTAGCCCACTATCAGCGGATTGATGGGTTACAGAAGACTTATGCATGTGGTCAATTTTCTAACCATAGTGGAAACGTGAAGAATAAGAGGAGAAGGTTAGAGTATGCGTGTGTTAATGGTCATTTGATGGATCCTAATGAAAGTTGTGGTAGTGATGAGAAAGGCCCAAACTCAGATCTTGGTCGAGAGTTTACCCTAAAAGCTTTTAAAAGCTATGCCGATGACTTTAAATCCCAGTATTTCAGCAGTGGAAATAAGTGCACATATACAGAAACAAAGTCATCCATGCTTCAAGAGCAGTGGGAACCGTTGGTGGATCAAGTAGAGGGTGAATATAGACGCATTCTCGAGAATCCAACTGAACAAATTGAGGTGCTATGCGGTGATAGTTCGGGTGGCCTTTCACTTGGCAGCGGATTTCCATCATCATCCAGTCCTTTGACTGAGCCAGGTCATGCTGATCATATGGAATCTGGATGGAACTTAAATAATTTACCTAGACTACCTGGTTCACTTCTTTCTTTGGATAGCTTCAAGACATATTCTATTTTGTCACCTCGAGTATGCGTGGGAATGTGCTTTTCTACCGCTTGTTGGCGAGTTGAAGAACACCACTTACCTTTGTTATGTTACTTGCACTTGGGAGCTCCTAAAATATGGTATGGCATTCCAGGAAGATACATTGATAAATTTGACGTAGCCATGAAGAGCCTTCCGGAATTTTTTGTGGAACAGAAAAGGTCTCGTAGAGGAATGGTCAATCAACCATCAATTGCCACATTGAAGAGAGAAGGTGTACCAATTTACCGTTGCATTCAAAATGCAGGAGAGTTTGTTCTCGTCTTTCCAGGAGCATGTCATTCAGGATTTAACTGTGGGTTTAATGTTACTGAAGAAGCCAATTTTGCTCCCCTTGACTGGTTGCCTCACGGTTATAATGCTACAGAGCTGTACTCTATAGAGAGAAGGAAGACGTTAATATCCTTCGATAGGCTGTTGCTTGGAGCAGCCACTGAAGCTGTGAAGGCACAGTGGGAACTCTCACTATGCAGGAAGGAAACCAAAGATAATTTACGATGGAAAAATGCCTGTGGAAAGCATGGGATATTAGCCCAGACATTCAAGTCTCGCATCAAAAGTGAAAGTCTCAGGAGGGAGTATCTTGCGACAGCTTCACAGACACGTGAAGTAACCGAAAGTTTTGATGCTGTCAGGAAGCGCGAATGCAGCATTTGCCTTTATGACTTACACTTGTCTGCAGCTGGTTGTTCATGTTCTGCTGATAGGTACTCTTGTTTGAATCACGCTAAGCAACTCTGTTCTTGTGCTTGGGTCAACAAATTCTTTGTCGTGCGGTACCAAATGGCCAACTTAAATCTTCTTCTTGAAGCCTTGGAAGGAAAACTAAGTGCAGTCTACAAATGGGCCAAAGAGAATCTTGGACTTGCTGTGCATTCCTACAAGAATAGTTCACTGCAATCTCAGCCTGCTGATACACCCCAGTCTTCACAAGGGCATCAATCCGAGGATGCAGAATCTCCAAATACTTTTAATAACTCGATCAATAGAATTAAGGCAGAGATAAAGGCACGTCTTCTTCAAGCGAAAACCTTGAAGAATATGAAAGGAAATGACAGGGTAATAGAATCCGTGGATGCAGTTAAAGACAATGGTATTGTCACAAATTTGGATTCGAGAATTCCAGCAGAAAAAACCGCATCGAAGCTACAGCCAGTGAGTTCGAATGAGCTCAAAGGAAAAGAGTGTACATCAATCCCAGCAGTAGTTTTAAATGAAAGAGGAGATGTTTTAATCTTTTCACTCAATTTGGAGTCTTTTGCAACTTTACCTGAGAACTCAGTCTCAAGCTTCTCTGAATCCGATGACGATTGGTCAGATTCTGGCTTTTAA 2505 42.44 MEQSTVLCSTFAVVNNCSIVCFLGFSDRFRNPSSGFKFFSVFKLNFISKPPYLHPNSLPSSHLKFHSLHYSLSLIRACRQRPWILFDQNKEDSLEFESMEQNLPPQSDLSKGVAHGCPECSDCLKVTARWRPDDARSDILEEAAVFYPTEEEFADTLHYIERIRSRAESSGICRIVPPPSWLPPCLLKGKETWENSPFLAHYQRIDGLQKTYACGQFSNHSGNVKNKRRRLEYACVNGHLMDPNESCGSDEKGPNSDLGREFTLKAFKSYADDFKSQYFSSGNKCTYTETKSSMLQEQWEPLVDQVEGEYRRILENPTEQIEVLCGDSSGGLSLGSGFPSSSSPLTEPGHADHMESGWNLNNLPRLPGSLLSLDSFKTYSILSPRVCVGMCFSTACWRVEEHHLPLLCYLHLGAPKIWYGIPGRYIDKFDVAMKSLPEFFVEQKRSRRGMVNQPSIATLKREGVPIYRCIQNAGEFVLVFPGACHSGFNCGFNVTEEANFAPLDWLPHGYNATELYSIERRKTLISFDRLLLGAATEAVKAQWELSLCRKETKDNLRWKNACGKHGILAQTFKSRIKSESLRREYLATASQTREVTESFDAVRKRECSICLYDLHLSAAGCSCSADRYSCLNHAKQLCSCAWVNKFFVVRYQMANLNLLLEALEGKLSAVYKWAKENLGLAVHSYKNSSLQSQPADTPQSSQGHQSEDAESPNTFNNSINRIKAEIKARLLQAKTLKNMKGNDRVIESVDAVKDNGIVTNLDSRIPAEKTASKLQPVSSNELKGKECTSIPAVVLNERGDVLIFSLNLESFATLPENSVSSFSESDDDWSDSGF 834
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 7150498 7156148 - ClG42_09g0079500.10 Clacu09g0795 257103
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g0795 834 ProSiteProfiles JmjC domain profile. 352 517 IPR003347 -
Clacu09g0795 834 MobiDBLite consensus disorder prediction 689 715 - -
Clacu09g0795 834 Gene3D Cupin 128 501 - -
Clacu09g0795 834 SMART cupin_9 352 517 IPR003347 -
Clacu09g0795 834 PANTHER LYSINE-SPECIFIC DEMETHYLASE 138 716 - GO:0000785(PANTHER)|GO:0005634(PANTHER)|GO:0006338(PANTHER)|GO:0010468(PANTHER)|GO:0032452(PANTHER)|GO:0034647(PANTHER)
Clacu09g0795 834 Pfam C5HC2 zinc finger 607 657 IPR004198 -
Clacu09g0795 834 Pfam jmjN domain 145 177 IPR003349 -
Clacu09g0795 834 ProSiteProfiles JmjN domain profile. 143 184 IPR003349 -
Clacu09g0795 834 SUPERFAMILY Clavaminate synthase-like 352 544 - -
Clacu09g0795 834 Pfam JmjC domain, hydroxylase 386 500 IPR003347 -
Clacu09g0795 834 SMART JmjN_1 142 183 IPR003349 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu09g0795 Clacu-Chr9:7150498 Clacu11g1252 Clacu-Chr11:20811161 1.10E-176 dispersed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48317 PF02373 JmjC 1.70E-29 CL0029 Clacu TR
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g0795 K11446 - csv:101221486 1263.83