Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu09g0797 ATGGCAGCCTCTTCTTCTTCTCCTTCTTCTCCTCCATGTGGAGCTTGCAAGTTTCTTAGAAGAAAGTGTGTCAATGGCTGCATCTTTGCTCCTTATTTCCGCCACGAGCTCGGTGCCTCCCAATTCTCTGCCATCCACAAAGTTTTCGGTGCAAGCAATGCTTCCAAGCTTCTCGCTCACCTCCCAGTCTCCCACCGTTGCGAAGCGGCGGTGACGATCTCATACGAAGCTCAAGCGAGACTTCAAGATCCGATCTACGGTTGTGTATCTCATATTTTCGCTCTCCAGCAACAGGTTATGAATCTAAGGGCTCAAGTGGCTTATTTAAGAGAACAAGCAGCTCAAATCCTTCTCAACAACTACACTACAAGAAACCCTATTGAATTACCTTACGAAAAATCTTCATTTTATTCCGACGACCCATTACTAGATCTTCAAAGTTGGCTTCTGGCGGAGAGCTGCAGCGCCGCCGCGCCGGAGTTTGAATCTGCAGCGGTGCCGTACTTTGAGATGAGCGTCGTCGATTCAAATCTCGCCGGAGATTTCTGTTGCTAA 555 48.29 MAASSSSPSSPPCGACKFLRRKCVNGCIFAPYFRHELGASQFSAIHKVFGASNASKLLAHLPVSHRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQILLNNYTTRNPIELPYEKSSFYSDDPLLDLQSWLLAESCSAAAPEFESAAVPYFEMSVVDSNLAGDFCC 184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7180340 7181104 - ClG42_09g0079700.10 Clacu09g0797 257105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu09g0797 184 Coils Coil 92 112 - -
Clacu09g0797 184 PANTHER LOB DOMAIN CONTAINING PROTEIN 10 125 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
Clacu09g0797 184 Pfam Lateral organ boundaries (LOB) domain 12 109 IPR004883 -
Clacu09g0797 184 ProSiteProfiles LOB domain profile. 11 113 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0083 Clacu-Chr7:1242345 Clacu09g0797 Clacu-Chr9:7180340 1.40E-38 dispersed
Clacu07g0084 Clacu-Chr7:1254424 Clacu09g0797 Clacu-Chr9:7180340 2.00E-43 dispersed
Clacu07g0337 Clacu-Chr7:3837492 Clacu09g0797 Clacu-Chr9:7180340 2.50E-32 dispersed
Clacu09g0797 Clacu-Chr9:7180340 Clacu10g1569 Clacu-Chr10:28966015 9.90E-35 dispersed
Clacu09g0797 Clacu-Chr9:7180340 Clacu06g0035 Clacu-Chr6:567627 5.10E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48318 PF03195 LOB 1.20E-34 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu09g0797 K13945 - csv:101220863 335.109