Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu09g0839 | ATGGATGAAGATTTTGATATCCCTGCTGCCGCTGACATGAACGAGGACTTGGATCTTCCTGATGATACCATAGCTCTCAAGGTTGGGGAGGAGAAAGAAATTGGAAATCAAGGCTTGAAGAAGAAGCTTCTCAAAGAAGGTGAAGGATGGGTAACTCCTGAAAATGGCGATGAGGTTGAAGTTCACTATACTGGGACTTTGCTTGATGGGACTCAGTTTGATTCCAGCCGCGATCGTGGAACCCCGTTTAAGTTCACTCTTGGTCAAGGACAAGTGATCAAAGGATGGGATTTGGGTATCAAAACAATGAAGAAAAATGAAAAAGCTCTTTTTACCATTCCTCCTGATTTGGCATATGGTGAATCTGGCTCCCCACCAACCATTCCTCCTAGTGCGACATTGCAGTTCGATGTCGAGTTACTATCTTGGACAAGCGTTAAGGACATATGTAAGGATGGAGGAATATTCAAGAAGATCCTAACTGAAGGGGACAAATGGGATAATCCAAAGGACCTTGATGAAGTGCTAGTCAATTTTGAAGCTAAGCTAGAAGATGGAACACTTGTTGCAAAAGCTGATGGAGTGGAATTCACCGTTGGGGATGGTTACTTTTGCCCTGCTCTCGCAAAGGCTGTAAAAACCATGAAGATAGGTGAAAAGGCACTCCTCACAGTGAAGCCACAATATGGGTTTGGGGAGAAAGGTAAATCAGCCTCTAGTAATGAAGGTGCAGTTCCACCAAATGCATCCCTCGATATTACTTTGGAGTTGGTATCTTGGAAGACTGTTTCAGAAGTTACCCCTGACAAAAAGGTTATCAAGAAAATTCTGAAAGAAGGAGAAGGTTATGAGAAGCCAAATGACGGAGCCATTGTCAAAGTGAAATTGATTGGGAAGTTGGGAGATGGCAAGATATTTTTGAGGAAGGGATATGATGATGGTGAAGAGCCATTTGAGTTTAAAACAGACGAGGAACAAGTGATTGATGGCCTCGACAAAGCTGTGGCGACAATGAAGAAAGGTGAGATAGCCTTGCTGACAATAGCACCAGAGTATGCTTTTGGTTCGTCTGAGTCACAACAGGATTTGGCTATAGTTCCTCCAAACTCAACTGTGAATTACGAGGTTGAGCTTGTGGCTTTTGACAAGGAGAAAGAGTCATGGGATATGAATAACCAGGAAAAGATTGAAGCTGCTGGTAAAAAGAAGGAAGAAGGAAATGTGTTGTTCAAGTCTGGAAAATTTGCTAGAGCTTCCAAGAGATATGAGAAGGCTGTGAAGTTCATTGAATACGATTCTTCATTTAGTGAAGAAGAGAAAAAGCAGGCTAAGGCATTGAAAGTTGCATGCAATTTGAACAATGCGGCTTGTAAATTGAAGCTAAAGATGTACAACGAGGCAGAGAAATTGTGCACCAAGGTGCTAGAACTTGAGAGTTCAAATGTTAAGGCTCTCTATAGAAGGGCTCAAGCATATATCCAACTAGCTGACTTGGATTTAGCTGAATTTGACATCAAGAAGGCTCTCGATATCGATCCGAATAACAGGGATGTGAAATTGGAATACAAAACTCTGAAGGAGAAGGTGAAGGAATACAATAAAAAGGATGCCAAGTTTTACGGCAACATGTTTGCCAAAATGAAGAAAGTAGAATCTGCCTAA | 1662 | 41.88 | MDEDFDIPAAADMNEDLDLPDDTIALKVGEEKEIGNQGLKKKLLKEGEGWVTPENGDEVEVHYTGTLLDGTQFDSSRDRGTPFKFTLGQGQVIKGWDLGIKTMKKNEKALFTIPPDLAYGESGSPPTIPPSATLQFDVELLSWTSVKDICKDGGIFKKILTEGDKWDNPKDLDEVLVNFEAKLEDGTLVAKADGVEFTVGDGYFCPALAKAVKTMKIGEKALLTVKPQYGFGEKGKSASSNEGAVPPNASLDITLELVSWKTVSEVTPDKKVIKKILKEGEGYEKPNDGAIVKVKLIGKLGDGKIFLRKGYDDGEEPFEFKTDEEQVIDGLDKAVATMKKGEIALLTIAPEYAFGSSESQQDLAIVPPNSTVNYEVELVAFDKEKESWDMNNQEKIEAAGKKKEEGNVLFKSGKFARASKRYEKAVKFIEYDSSFSEEEKKQAKALKVACNLNNAACKLKLKMYNEAEKLCTKVLELESSNVKALYRRAQAYIQLADLDLAEFDIKKALDIDPNNRDVKLEYKTLKEKVKEYNKKDAKFYGNMFAKMKKVESA | 553 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 7729431 | 7733551 | + | ClG42_09g0083900.10 | Clacu09g0839 | 257147 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu09g0839 | 553 | Pfam | Tetratricopeptide repeat | 482 | 515 | IPR019734 | GO:0005515(InterPro) | |
| Clacu09g0839 | 553 | Gene3D | - | 31 | 147 | IPR046357 | GO:0003755(InterPro) | |
| Clacu09g0839 | 553 | ProSiteProfiles | TPR repeat profile. | 482 | 515 | IPR019734 | GO:0005515(InterPro) | |
| Clacu09g0839 | 553 | PANTHER | PEPTIDYLPROLYL ISOMERASE | 31 | 143 | IPR050754 | - | |
| Clacu09g0839 | 553 | FunFam | Peptidylprolyl isomerase | 148 | 261 | - | - | |
| Clacu09g0839 | 553 | Gene3D | - | 148 | 261 | IPR046357 | GO:0003755(InterPro) | |
| Clacu09g0839 | 553 | SUPERFAMILY | FKBP-like | 33 | 148 | - | - | |
| Clacu09g0839 | 553 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 56 | 144 | IPR001179 | GO:0003755(InterPro) | |
| Clacu09g0839 | 553 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 172 | 261 | IPR001179 | GO:0003755(InterPro) | |
| Clacu09g0839 | 553 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 168 | 257 | IPR001179 | GO:0003755(InterPro) | |
| Clacu09g0839 | 553 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 283 | 379 | IPR001179 | GO:0003755(InterPro) | |
| Clacu09g0839 | 553 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 51 | 141 | IPR001179 | GO:0003755(InterPro) | |
| Clacu09g0839 | 553 | SUPERFAMILY | TPR-like | 387 | 547 | IPR011990 | GO:0005515(InterPro) | |
| Clacu09g0839 | 553 | Gene3D | Tetratricopeptide repeat domain | 385 | 542 | IPR011990 | GO:0005515(InterPro) | |
| Clacu09g0839 | 553 | FunFam | Peptidylprolyl isomerase | 29 | 147 | - | - | |
| Clacu09g0839 | 553 | Coils | Coil | 515 | 535 | - | - | |
| Clacu09g0839 | 553 | SUPERFAMILY | FKBP-like | 148 | 264 | - | - | |
| Clacu09g0839 | 553 | FunFam | Peptidylprolyl isomerase | 262 | 384 | - | - | |
| Clacu09g0839 | 553 | FunFam | Peptidylprolyl isomerase | 387 | 542 | - | - | |
| Clacu09g0839 | 553 | Gene3D | - | 262 | 383 | IPR046357 | GO:0003755(InterPro) | |
| Clacu09g0839 | 553 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 289 | 382 | IPR001179 | GO:0003755(InterPro) | |
| Clacu09g0839 | 553 | SMART | tpr_5 | 399 | 432 | IPR019734 | GO:0005515(InterPro) | |
| Clacu09g0839 | 553 | SMART | tpr_5 | 482 | 515 | IPR019734 | GO:0005515(InterPro) | |
| Clacu09g0839 | 553 | SMART | tpr_5 | 448 | 481 | IPR019734 | GO:0005515(InterPro) | |
| Clacu09g0839 | 553 | SUPERFAMILY | FKBP-like | 264 | 399 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu05g0831 | Clacu-Chr5:7137423 | Clacu09g0839 | Clacu-Chr9:7729431 | 1.00E-242 | dispersed | |
| Clacu07g1522 | Clacu-Chr7:29816641 | Clacu09g0839 | Clacu-Chr9:7729431 | 2.70E-10 | dispersed | |
| Clacu09g0839 | Clacu-Chr9:7729431 | Clacu11g0828 | Clacu-Chr11:8189848 | 4.20E-20 | dispersed | |
| Clacu09g0839 | Clacu-Chr9:7729431 | Clacu05g0881 | Clacu-Chr5:7701381 | 3.90E-18 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu09g0839 | K09571 | - | csv:101214513 | 1046.96 |